Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
mrc1b | 2: 31515853 ~ 31540922 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain |
Microglia (cluster: 4) |
potential marker |
NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epidermal cells (cluster: 9) |
potential marker |
NA |
|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Immune cells (cluster: 8) |
potential marker |
NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Macrophages (cluster: 8) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Monocytes (cluster: 26) |
potential marker |
NA |
|
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum |
Epithelialized macrophages (cluster: 3) |
potential marker |
NA |
|
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Macrophages (cluster: 2) Coronary endothelial cells (cluster: 5) Macrophages (cluster: 6) Macrophages (cluster: 9) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury |
Macrophages (cluster: 6) |
potential marker |
NA |
|
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured |
Macrophages (cluster: 7) |
potential marker |
NA |
|
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury |
Macrophages (cluster: 2) Macrophages (cluster: 5) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury |
Macrophages (cluster: 2) |
potential marker |
NA |
|
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury |
Macrophages (cluster: 6) |
potential marker |
NA |
|
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood |
Macrophages (cluster: 9) |
potential marker |
NA |
|
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment |
Microglia (cluster: 11) |
potential marker |
NA |
|
GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC |
Immune cells (cluster: 7) |
potential marker |
NA |
|
GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC | ||||
GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC |
Immune cells (cluster: 9) |
potential marker |
NA |
|
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Macrophages (cluster: 18) |
potential marker |
NA |
|
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih |
Microglia (cluster: 12) |
potential marker |
NA |
|
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) |
Endothelium (cluster: 12) Immune cells (cluster: 9) |
potential marker potential marker |
NA NA |
|
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) |
Immune cells (cluster: 5) Endothelium (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Macrophages (cluster: 42) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT |
Macrophages (cluster: 6) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT |
Macrophages (cluster: 7) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Macrophages (cluster: 7) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Macrophages (cluster: 10) |
potential marker |
NA |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish | ||||
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | ||||
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry | ||||
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) | ||||
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | ||||
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury | ||||
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured | ||||
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver | ||||
GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA | ||||
GSE150498 (wildtype, 2X DSS) | intestine | disease | 6dpf, wildtype, 2X DSS | ||||
GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated | ||||
GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | ||||
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS | ||||
GSE150498 (nod2-|-, 2X DSS) | intestine | disease | 6dpf, nod2-/-, 2X DSS | ||||
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS | ||||
GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | ||||
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | ||||
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | ||||
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | ||||
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
PRJNA641144 (C_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro co-culture | ||||
PRJNA641144 (D_INV) | tumor | disease | adult, ZMEL1-INV cells in vitro individual culture | ||||
PRJNA641144 (P_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo primary tumors | ||||
PRJNA641144 (D_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro individual culture | ||||
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | ||||
GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | ||||
PRJNA641144 (C_INV) | tumor | disease | adult, ZMEL1-INV cells in vitro co-culture | ||||
PRJNA641144 (M_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo metastases | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |