DATASET ID: PRJNA668529 (3d)

Basic information

Tissue / Organ olfactory rosette
Experiment type disease
Sample 3mpf, intranasal 100ng r-Spike 3 days
Source dataset ID SRR12858254
Project ID PRJNA668529
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Lymphocyte cells ENSDARG00000055186 (ccr9a) protein_coding marker DOI:10.1007/s00251-007-0250-6, DOI:10.1016/j.bbi.2022.03.006
    2 Basal cells ENSDARG00000058371 (krt5) protein_coding marker DOI:10.1073/pnas.1620664114, DOI:10.1016/j.bbi.2022.03.006
    2 Basal cells ENSDARG00000035809 (col1a1b) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    3 Neuron ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    3 Neuron ENSDARG00000019566 (neurod1) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    4 Neuronal progenitor ENSDARG00000103117 (tmprss4a) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    5 Ciliated olfactory sensory neuron ENSDARG00000032380 (ompb) protein_coding marker DOI:10.1073/pnas.93.18.9858, DOI:10.1016/j.bbi.2022.03.006
    5 Ciliated olfactory sensory neuron ENSDARG00000105218 (ompa) protein_coding marker DOI:10.1073/pnas.93.18.9858, DOI:10.1016/j.bbi.2022.03.006
    6 Neuronal precursor cells ENSDARG00000028335 (hmga1a) protein_coding marker DOI:10.1155/2018/3698078, DOI:10.1016/j.bbi.2022.03.006
    7 Endothelium ENSDARG00000030125 (sox7) protein_coding marker DOI:10.3389/fcvm.2019.00030, DOI:10.1016/j.bbi.2022.03.006
    8 Microvillus olfactory sensory neuron ENSDARG00000003344 (trpc2b) protein_coding marker DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
    8 Microvillus olfactory sensory neuron ENSDARG00000038729 (s100z) protein_coding marker DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
    9 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/blood-2010-10-314, DOI:10.1016/j.bbi.2022.03.006
    10 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/blood-2010-10-314, DOI:10.1016/j.bbi.2022.03.006
    11 T cells ENSDARG00000015752 (zap70) protein_coding marker DOI:10.4049/jimmunol.171.1.15, DOI:10.1016/j.bbi.2022.03.006
    15 Macrophages ENSDARG00000055290 (mpeg1.1) protein_coding marker DOI:10.1182/blood-2010-10-314, DOI:10.1016/j.bbi.2022.03.006
    16 Neuronal progenitor ENSDARG00000077573 (tmprss13b) protein_coding marker DOI:10.1016/j.bbi.2022.03.006
    17 Myeloid cells ENSDARG00000104474 (il6r) protein_coding marker DOI:10.1016/j.bbi.2022.03.006

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)