GENE ID: ENSDARG00000028335


Symbol Location Gene type Genome version Species
hmga1a 23: 3751451 ~ 3759692 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000028335 (hmga1a), yellow represents other genes.
  • Hover over the node can see the symbol/gene ID it represents.
  • The more connections, the bigger symbol size.


  • MARKER



    EXPRESSION


    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Neuronal precursor cells (cluster: 6)
    marker
    DOI:10.1155/2018/3698078, DOI:10.1016/j.bbi.2022.03.006
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 12)
    Progenitors (cluster: 16)
    Progenitors (cluster: 8)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Progenitors (cluster: 3)
    potential marker
    NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Progenitors (cluster: 3)
    Progenitors (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Progenitors (cluster: 4)
    potential marker
    NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Endothelium (cluster: 5)
    potential marker
    NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Endothelium (cluster: 5)
    HSPCs (cluster: 8)
    potential marker
    potential marker
    NA
    NA
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Immune cells (cluster: 4)
    potential marker
    NA
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Immune cells (cluster: 4)
    potential marker
    NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    potential marker
    NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 5)
    potential marker
    NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    potential marker
    NA
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled) Ectoderm cells (cluster: 1)
    potential marker
    NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 1)
    potential marker
    NA
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Neural crest (cluster: 3)
    potential marker
    NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 2)
    Neuron (cluster: 3)
    potential marker
    potential marker
    NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 14)
    Neuroblast (cluster: 3)
    Neuron (cluster: 4)
    Cranial neural crest (cluster: 6)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
    Neuron (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Proliferating cells (cluster: 5)
    Proliferating cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Hindbrain rhombomere (cluster: 1)
    potential marker
    NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Cycling progenitors (cluster: 1)
    Cycling progenitors (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Progenitors (cluster: 1)
    potential marker
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Progenitors (cluster: 1)
    potential marker
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Retina neuroblasts (cluster: 6)
    potential marker
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Neuron (cluster: 3)
    potential marker
    NA
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured Macrophages (cluster: 6)
    potential marker
    NA
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Macrophages (cluster: 9)
    potential marker
    NA
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Macrophages (cluster: 9)
    potential marker
    NA
    GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC Immune cells (cluster: 4)
    potential marker
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Neuron (cluster: 6)
    potential marker
    NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 1)
    potential marker
    NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal progenitors (cluster: 1)
    Bipolar cells (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal progenitors (cluster: 1)
    potential marker
    NA
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Amacrine cells (cluster: 1)
    Bipolar cells (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 4)
    Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 4)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Spinal cord (cluster: 2)
    Fibroblasts (cluster: 5)
    Lateral mesoderm (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Neuron (cluster: 13)
    Proliferating progenitors (cluster: 14)
    Neuron (cluster: 15)
    Iridophore (cluster: 9)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 4)
    potential marker
    NA
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors Melanoma cells (cluster: 2)
    potential marker
    NA
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases Melanoma cells (cluster: 3)
    potential marker
    NA
    PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture Melanoma cells (cluster: 3)
    potential marker
    NA
    PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture Melanoma cells (cluster: 2)
    Melanoma cells (cluster: 3)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture Melanoma cells (cluster: 3)
    Melanoma cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture Melanoma cells (cluster: 2)
    Melanoma cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Proliferating cells (cluster: 13)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Multipotent cells (cluster: 2)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT Multipotent cells (cluster: 4)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Multipotent cells (cluster: 2)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Multipotent cells (cluster: 6)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Neutrophils (cluster: 3)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- HSPCs (cluster: 5)
    Multipotent cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells