GENE ID: ENSDARG00000029722

Symbol Location Gene type Genome version Species
hmgb2a 1: 38169512 ~ 38171787 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000029722 (hmgb2a), yellow represents other genes.
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    • MARKER



    EXPRESSION

    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 16)
    Progenitors (cluster: 8)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Progenitors (cluster: 3)
    		 potential marker
    		 NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Progenitors (cluster: 3)
    Progenitors (cluster: 7)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Progenitors (cluster: 4)
    		 potential marker
    		 NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Endothelium (cluster: 5)
    		 potential marker
    		 NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Erythroid cells (cluster: 3)
    Endothelium (cluster: 5)
    HSPCs (cluster: 8)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Epidermal cells (cluster: 5)
    		 potential marker
    		 NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    		 potential marker
    		 NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
    		 potential marker
    		 NA
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled) Ectoderm cells (cluster: 1)
    		 potential marker
    		 NA
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled) Ectoderm cells (cluster: 2)
    		 potential marker
    		 NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 1)
    		 potential marker
    		 NA
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells PMN progenitors (cluster: 2)
    		 potential marker
    		 NA
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Ionocyte progenitors (cluster: 3)
    Ionocyte progenitors (cluster: 6)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 3)
    		 potential marker
    		 NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 14)
    Neuroblast (cluster: 3)
    Neuron (cluster: 4)
    Cranial neural crest (cluster: 6)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
    Neuroblast (cluster: 10)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Proliferating cells (cluster: 5)
    		 potential marker
    		 NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Mid,hind progenitors (neural plate) (cluster: 1)
    		 potential marker
    		 NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Hindbrain rhombomere (cluster: 1)
    Hindbrain (cluster: 2)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Cycling progenitors (cluster: 1)
    Cycling progenitors (cluster: 2)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Progenitors (cluster: 2)
    		 potential marker
    		 NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Progenitors (cluster: 1)
    		 potential marker
    		 NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Pharyngeal arch (cluster: 2)
    Retina neuroblasts (cluster: 6)
    Progenitors (cluster: 9)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Neuron (cluster: 3)
    		 potential marker
    		 NA
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Macrophages (cluster: 9)
    		 potential marker
    		 NA
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Macrophages (cluster: 9)
    		 potential marker
    		 NA
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Progenitors (cluster: 6)
    		 potential marker
    		 NA
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 5)
    		 potential marker
    		 NA
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 4)
    		 potential marker
    		 NA
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 4)
    		 potential marker
    		 NA
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Support cells (cluster: 2)
    		 potential marker
    		 NA
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Hair cells (cluster: 1)
    		 potential marker
    		 NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Ciliated olfactory sensory neuron (cluster: 5)
    Neuronal precursor cells (cluster: 6)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Ciliated olfactory sensory neuron (cluster: 1)
    		 potential marker
    		 NA
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Ciliated olfactory sensory neuron (cluster: 1)
    		 potential marker
    		 NA
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Somatolactotropes (cluster: 1)
    		 potential marker
    		 NA
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Somatolactotropes (cluster: 1)
    		 potential marker
    		 NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 1)
    Retinal progenitors (cluster: 3)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal progenitors (cluster: 1)
    Bipolar cells (cluster: 5)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal progenitors (cluster: 1)
    		 potential marker
    		 NA
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Amacrine cells (cluster: 1)
    Bipolar cells (cluster: 2)
    Photoreceptor cells (cluster: 5)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 4)
    Retinal progenitors (cluster: 3)
    Retinal progenitors (cluster: 4)
    		 potential marker
    potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    NA
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Spinal cord (cluster: 2)
    Fibroblasts (cluster: 5)
    Lateral mesoderm (cluster: 7)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Proliferating progenitors (cluster: 14)
    Neuron (cluster: 15)
    Iridophore (cluster: 9)
    		 potential marker
    potential marker
    potential marker
    		 NA
    NA
    NA
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells Interface (cluster: 2)
    		 potential marker
    		 NA
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 4)
    		 potential marker
    		 NA
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors Melanoma cells (cluster: 2)
    		 potential marker
    		 NA
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases Melanoma cells (cluster: 5)
    		 potential marker
    		 NA
    PRJNA641144 (M_PRO) tumor disease adult, ZMEL1-PRO cells in vivo metastases Melanoma cells (cluster: 3)
    		 potential marker
    		 NA
    PRJNA641144 (D_INV) tumor disease adult, ZMEL1-INV cells in vitro individual culture Melanoma cells (cluster: 3)
    Melanoma cells (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA641144 (D_PRO) tumor disease adult, ZMEL1-PRO cells in vitro individual culture Melanoma cells (cluster: 2)
    Melanoma cells (cluster: 3)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA641144 (C_INV) tumor disease adult, ZMEL1-INV cells in vitro co-culture Melanoma cells (cluster: 3)
    Melanoma cells (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    PRJNA641144 (C_PRO) tumor disease adult, ZMEL1-PRO cells in vitro co-culture Melanoma cells (cluster: 2)
    Melanoma cells (cluster: 4)
    		 potential marker
    potential marker
    		 NA
    NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Proliferating cells (cluster: 13)
    		 potential marker