Fish Single-cell RNA Database

CELL TYPE: Pharyngeal arch

Distribution of Pharyngeal arch in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000012066	dcn	4: 16368762 ~ 16412084 (-)
ENSDARG00000025073	rpl18a	4: 391297 ~ 398451 (+)
ENSDARG00000037960	lrrc17	4: 20141191 ~ 20156085 (-)
ENSDARG00000032765	net1	4: 11573568 ~ 11603149 (-)
ENSDARG00000045487	rps16	4: 21648010 ~ 21652812 (-)
ENSDARG00000101813	nap1l1	4: 2354892 ~ 2380173 (-)
ENSDARG00000094854	ms4a17a.9	4: 76608282 ~ 76633286 (+)
ENSDARG00000104011	rps17	7: 54092291 ~ 54098631 (-)
ENSDARG00000036044	rps20	7: 58745987 ~ 58750400 (+)
ENSDARG00000024877	ptgr1	7: 24375070 ~ 24390879 (-)
ENSDARG00000069432	plscr3b	7: 26580501 ~ 26603743 (-)
ENSDARG00000029500	rpl34	7: 59649399 ~ 59664545 (+)
ENSDARG00000017676	mmp2	7: 35410050 ~ 35432901 (-)
ENSDARG00000021442	cdh11	7: 43760149 ~ 43857938 (-)
ENSDARG00000036298	rps13	7: 27041315 ~ 27044013 (+)
ENSDARG00000014690	rps4x	7: 51633815 ~ 51639699 (-)
ENSDARG00000099380	rpl13	7: 67467702 ~ 67477495 (+)
ENSDARG00000011201	rplp2l	7: 12959846 ~ 12968701 (-)
ENSDARG00000101762	fah	7: 10592152 ~ 10632375 (+)
ENSDARG00000019230	rpl7a	5: 33284144 ~ 33287691 (-)
ENSDARG00000089769	hapln1a	5: 46490622 ~ 46505702 (-)
ENSDARG00000051783	rplp0	5: 1950660 ~ 1963498 (-)
ENSDARG00000058128	msna	5: 22133153 ~ 22174037 (+)
ENSDARG00000068036	tmem119b	5: 31872049 ~ 31875645 (-)
ENSDARG00000058105	rpl36a	5: 22510639 ~ 22515186 (+)
ENSDARG00000014817	ranbp1	5: 19006701 ~ 19014589 (-)
ENSDARG00000006691	rpl12	5: 32882688 ~ 32887020 (+)
ENSDARG00000004251	dhfr	5: 26138313 ~ 26146488 (+)
ENSDARG00000013853	lmo4a	5: 32924669 ~ 32962023 (+)
ENSDARG00000003599	rpl3	3: 29867213 ~ 29871364 (-)
ENSDARG00000015128	rpl27	3: 29893966 ~ 29899230 (-)
ENSDARG00000027749	hirip3	3: 15193521 ~ 15210491 (-)
ENSDARG00000053058	rps11	3: 37787229 ~ 37789244 (+)
ENSDARG00000096849	si:dkey-16p21.8	3: 32325143 ~ 32337695 (-)
ENSDARG00000019507	mcm5	3: 25999477 ~ 26011440 (+)
ENSDARG00000006553	rras	3: 32410746 ~ 32416121 (+)
ENSDARG00000027063	arpc1b	3: 40809011 ~ 40820612 (+)
ENSDARG00000012405	col1a1a	3: 23221047 ~ 23239458 (+)
ENSDARG00000011956	dlx4a	3: 34670076 ~ 34681421 (+)
ENSDARG00000010160	rps15a	3: 26345732 ~ 26351656 (+)
ENSDARG00000013307	rpl19	3: 16229911 ~ 16232442 (+)
ENSDARG00000077291	rps2	3: 18398876 ~ 18403179 (+)
ENSDARG00000053457	rpl23	3: 33423986 ~ 33427803 (-)
ENSDARG00000105223	pmp22a	3: 50861176 ~ 50865079 (-)
ENSDARG00000101037	asf1ba	3: 49504919 ~ 49514874 (-)
ENSDARG00000059906	sdc4	6: 52663097 ~ 52675630 (-)
ENSDARG00000034897	rps10	6: 54174696 ~ 54180699 (-)
ENSDARG00000057683	mcm6	6: 12968101 ~ 12985390 (+)
ENSDARG00000104353	nop58	6: 9664206 ~ 9695294 (-)
ENSDARG00000006260	tuba8l4	6: 6972953 ~ 6976107 (-)
ENSDARG00000027589	fzd7b	6: 9703721 ~ 9707599 (-)
ENSDARG00000015862	rpl5b	6: 29086594 ~ 29097393 (+)
ENSDARG00000039208	nasp	6: 33911154 ~ 33916788 (-)
ENSDARG00000006514	her6	6: 36551083 ~ 36552844 (-)
ENSDARG00000019181	rpsa	6: 7709662 ~ 7720332 (-)
ENSDARG00000005191	ahcy	6: 49926115 ~ 49966288 (+)
ENSDARG00000100446	si:ch211-286o17.1	6: 47424266 ~ 47462413 (+)
ENSDARG00000032725	rps27a	6: 6270686 ~ 6273519 (+)
ENSDARG00000030408	rps26l	6: 49520124 ~ 49526510 (-)
ENSDARG00000003375	gng12a	2: 10287133 ~ 10338813 (-)
ENSDARG00000009534	wls	2: 10342177 ~ 10386738 (-)
ENSDARG00000035860	rps28	2: 24507597 ~ 24509698 (+)
ENSDARG00000009014	col11a1b	2: 15389193 ~ 15563194 (-)
ENSDARG00000020197	rpl5a	2: 10687276 ~ 10703621 (-)
ENSDARG00000060041	lig1	2: 44301276 ~ 44344321 (-)
ENSDARG00000035858	cnn2	2: 24548249 ~ 24554432 (-)
ENSDARG00000091481	foxc1a	2: 686873 ~ 689047 (-)
ENSDARG00000055996	rps8a	2: 26498446 ~ 26501868 (+)
ENSDARG00000056378	ifi30	2: 24762567 ~ 24767470 (+)
ENSDARG00000102291	eef1da	2: 50999477 ~ 51032888 (+)
ENSDARG00000008388	mmp14b	2: 38161318 ~ 38183641 (+)
ENSDARG00000061140	colec12	2: 31382590 ~ 31435158 (+)
ENSDARG00000055945	asph	2: 26655744 ~ 26682182 (+)
ENSDARG00000007320	rpl7	2: 30177476 ~ 30182353 (-)
ENSDARG00000056186	eif5a2	2: 25839193 ~ 25845337 (+)
ENSDARG00000033971	prrx1a	2: 23165250 ~ 23172708 (-)
ENSDARG00000099104	rpl24	1: 6408 ~ 12027 (-)
ENSDARG00000035692	rps3a	1: 24355515 ~ 24359653 (+)
ENSDARG00000002937	meis1a	1: 51475094 ~ 51525086 (+)
ENSDARG00000037350	rpl9	1: 23269503 ~ 23274504 (-)
ENSDARG00000078659	tmem176	1: 44935442 ~ 44940953 (-)
ENSDARG00000075045	cxcl18b	1: 49222164 ~ 49225890 (-)
ENSDARG00000074378	junba	1: 51732979 ~ 51734535 (-)
ENSDARG00000019778	rps6	1: 45043767 ~ 45049603 (-)
ENSDARG00000023330	anp32b	1: 26660369 ~ 26664840 (-)
ENSDARG00000029722	hmgb2a	1: 38169512 ~ 38171787 (-)
ENSDARG00000008305	hand2	1: 38193147 ~ 38195012 (-)
ENSDARG00000007396	rnd3b	9: 23026324 ~ 23033818 (-)
ENSDARG00000005128	rnaseh2b	9: 29671553 ~ 29679172 (+)
ENSDARG00000014867	rpl8	9: 33323104 ~ 33329787 (-)
ENSDARG00000019496	esd	9: 25171662 ~ 25181697 (-)
ENSDARG00000077620	cdca7a	9: 2879763 ~ 2892250 (-)
ENSDARG00000099148	bzw1b	9: 426392 ~ 433915 (+)
ENSDARG00000039576	fstl1b	9: 9735493 ~ 9842149 (-)
ENSDARG00000005251	rpe	9: 24025444 ~ 24031461 (-)
ENSDARG00000060004	fzd7a	9: 13352308 ~ 13355071 (-)
ENSDARG00000099236	sept10	9: 55857193 ~ 55875077 (+)
ENSDARG00000079964	dlx2a	9: 3397407 ~ 3400729 (-)
ENSDARG00000058593	sri	16: 7242610 ~ 7260345 (+)
ENSDARG00000029533	rpl18	16: 16969086 ~ 16991808 (+)
ENSDARG00000076010	twist1b	16: 19732543 ~ 19734149 (+)
ENSDARG00000011405	rps9	16: 31921812 ~ 31927522 (+)
ENSDARG00000037998	flot1b	16: 10287588 ~ 10316359 (-)
ENSDARG00000033172	nr2f5	16: 46294337 ~ 46327301 (+)
ENSDARG00000037188	rpa2	16: 4746588 ~ 4770233 (-)
ENSDARG00000053912	fbl	16: 42177659 ~ 42186093 (-)
ENSDARG00000030602	rps19	16: 24188114 ~ 24195361 (-)
ENSDARG00000101481	rbp5	16: 31706841 ~ 31718013 (-)
ENSDARG00000005791	rpl28	16: 51883725 ~ 51889734 (-)
ENSDARG00000033539	paics	20: 25618114 ~ 25631256 (-)
ENSDARG00000055398	foxc1b	20: 26702377 ~ 26704331 (+)
ENSDARG00000042027	prrx1b	20: 34511678 ~ 34521041 (+)
ENSDARG00000042566	rps7	20: 30372352 ~ 30377221 (-)
ENSDARG00000024204	mcm3	20: 34770197 ~ 34783743 (+)
ENSDARG00000043531	jun	20: 15552657 ~ 15554606 (+)
ENSDARG00000031683	fosab	20: 46552311 ~ 46554440 (-)
ENSDARG00000020133	jdp2b	20: 46586678 ~ 46595151 (+)
ENSDARG00000030092	tram2	20: 48116476 ~ 48139941 (+)
ENSDARG00000042428	gstt1a	8: 30787111 ~ 30791266 (-)
ENSDARG00000058451	rpl6	8: 2493794 ~ 2506384 (-)
ENSDARG00000028275	sult1st1	8: 46499098 ~ 46509194 (-)
ENSDARG00000046143	prkab1b	8: 39674707 ~ 39703689 (+)
ENSDARG00000042905	rpl10a	8: 23738122 ~ 23742985 (+)
ENSDARG00000069100	aldh9a1a.1	8: 21094884 ~ 21103522 (-)
ENSDARG00000092035	si:ch211-156j16.1	8: 26818446 ~ 26838845 (+)
ENSDARG00000042708	tuba8l	8: 28345352 ~ 28349859 (-)
ENSDARG00000044093	rpl13a	17: 24615091 ~ 24618279 (+)
ENSDARG00000097478	qkia	17: 27723490 ~ 27814135 (+)
ENSDARG00000032617	fgfrl1a	14: 17442913 ~ 17563773 (-)
ENSDARG00000102317	rpl26	14: 52563794 ~ 52568371 (+)
ENSDARG00000037397	ssrp1a	14: 21980446 ~ 22100118 (-)
ENSDARG00000037393	slc43a1a	14: 22076596 ~ 22098011 (+)
ENSDARG00000058062	magt1	14: 12370375 ~ 12391506 (-)
ENSDARG00000071586	tgfbi	14: 26511041 ~ 26536504 (-)
ENSDARG00000037555	atoh8	14: 9507291 ~ 9522364 (-)
ENSDARG00000076667	ccng1	14: 22129096 ~ 22140213 (+)
ENSDARG00000006456	pdgfrl	14: 30359124 ~ 30366196 (-)
ENSDARG00000071336	mif	14: 48960078 ~ 48970210 (+)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000057026	ran	14: 21685537 ~ 21693914 (+)
ENSDARG00000041607	eif4ebp3l	14: 6972868 ~ 6987649 (-)
ENSDARG00000039304	six1a	13: 31619961 ~ 31622195 (-)
ENSDARG00000052721	prim2	13: 23488282 ~ 23612369 (-)
ENSDARG00000039347	rps24	13: 30225262 ~ 30235220 (+)
ENSDARG00000075730	dnph1	13: 4218329 ~ 4223955 (-)
ENSDARG00000037116	cxcl12a	13: 30804367 ~ 30819715 (+)
ENSDARG00000041182	rpl4	18: 19451070 ~ 19456269 (-)
ENSDARG00000054632	fli1a	18: 48423973 ~ 48487875 (+)
ENSDARG00000068401	yap1	18: 37283765 ~ 37355666 (-)
ENSDARG00000020405	napab	18: 44673990 ~ 44696815 (+)
ENSDARG00000103007	rps3	18: 3037998 ~ 3052284 (+)
ENSDARG00000088030	rpl35a	18: 45781115 ~ 45791224 (+)
ENSDARG00000026611	socs3b	12: 34258139 ~ 34277465 (+)
ENSDARG00000031293	dnajc9	12: 9497646 ~ 9510403 (+)
ENSDARG00000014626	dlx3b	12: 5708400 ~ 5711920 (+)
ENSDARG00000021864	rplp1	19: 1852078 ~ 1855368 (-)
ENSDARG00000005926	ak2	19: 35418683 ~ 35428914 (-)
ENSDARG00000030402	twist1a	19: 2229162 ~ 2231188 (-)
ENSDARG00000030449	crabp2b	19: 8973042 ~ 8980038 (+)
ENSDARG00000076659	cdca7b	19: 2569150 ~ 2582858 (-)
ENSDARG00000020007	col1a2	19: 40983221 ~ 41002980 (+)
ENSDARG00000100392	rps18	19: 18617608 ~ 18627025 (-)
ENSDARG00000005023	fkbp9	19: 42591150 ~ 42607451 (-)
ENSDARG00000035871	rpl30	19: 32855139 ~ 32860780 (+)
ENSDARG00000018010	crtap	19: 42609132 ~ 42617723 (+)
ENSDARG00000042296	dlx5a	19: 41470216 ~ 41472228 (-)
ENSDARG00000004169	stmn1a	19: 17205143 ~ 17210928 (-)
ENSDARG00000002613	rpa3	19: 25465025 ~ 25467185 (+)
ENSDARG00000014499	nutf2l	19: 20778011 ~ 20783758 (+)
ENSDARG00000009285	rpl15	19: 17385561 ~ 17395587 (+)
ENSDARG00000087198	cthrc1a	19: 12915498 ~ 12927089 (+)
ENSDARG00000020850	eef1a1l1	19: 43119014 ~ 43137740 (+)
ENSDARG00000043509	rpl11	19: 43780970 ~ 43786940 (+)
ENSDARG00000019949	serpinh1b	15: 29382454 ~ 29388012 (-)
ENSDARG00000097102	si:ch73-281n10.2	15: 5898410 ~ 5901514 (-)
ENSDARG00000043453	rps5	15: 39964943 ~ 39971756 (-)
ENSDARG00000037071	rps26	23: 27675581 ~ 27677516 (+)
ENSDARG00000089187	wfdc2	23: 12418613 ~ 12423778 (-)
ENSDARG00000036875	rps12	23: 31431956 ~ 31435922 (+)
ENSDARG00000025581	rpl10	23: 19712557 ~ 19715859 (-)
ENSDARG00000058358	krt8	23: 10249626 ~ 10254288 (-)
ENSDARG00000062129	mxra8b	23: 29889089 ~ 29906163 (+)
ENSDARG00000056499	ca6	23: 22634442 ~ 22650992 (-)
ENSDARG00000095774	emd	23: 19813677 ~ 19822223 (+)
ENSDARG00000070657	pa2g4b	23: 25291891 ~ 25301475 (+)
ENSDARG00000019646	twist3	23: 2669 ~ 9339 (+)
ENSDARG00000012593	col5a1	21: 6556635 ~ 6725780 (+)
ENSDARG00000017388	gstt1b	21: 15713097 ~ 15720534 (+)
ENSDARG00000006316	rpl23a	21: 26071874 ~ 26074640 (+)
ENSDARG00000057556	rpl17	21: 18997503 ~ 19067517 (+)
ENSDARG00000069422	nhp2	21: 30401784 ~ 30409204 (-)
ENSDARG00000069048	serpinf1	21: 40106448 ~ 40120169 (+)
ENSDARG00000018334	rpl35	21: 5873227 ~ 5881344 (-)
ENSDARG00000037009	banf1	21: 26709801 ~ 26715270 (-)
ENSDARG00000036629	rps14	21: 33454147 ~ 33458430 (+)
ENSDARG00000013430	bhmt	21: 40408 ~ 45920 (-)
ENSDARG00000077717	rpl29	11: 1396170 ~ 1400634 (-)
ENSDARG00000070849	rps15	11: 5926850 ~ 5931622 (+)
ENSDARG00000021838	rps23	11: 42556395 ~ 42561215 (+)
ENSDARG00000042458	rfc4	11: 45426609 ~ 45435014 (-)
ENSDARG00000044895	fmoda	11: 21025895 ~ 21031773 (-)
ENSDARG00000070873	ccl25b	11: 6259048 ~ 6265723 (-)
ENSDARG00000086826	sult6b1	11: 43375326 ~ 43388063 (+)
ENSDARG00000031907	ptbp1b	11: 14321113 ~ 14342507 (+)
ENSDARG00000070161	vamp3	11: 39928828 ~ 39956925 (+)
ENSDARG00000098635	irf2bp2b	11: 44723019 ~ 44726288 (+)
ENSDARG00000007407	barx1	11: 27543093 ~ 27545719 (+)
ENSDARG00000056995	snai1a	11: 25251495 ~ 25257595 (-)
ENSDARG00000073699	col9a1a	11: 11274940 ~ 11301357 (-)
ENSDARG00000011407	col2a1b	11: 32007 ~ 55224 (-)
ENSDARG00000014329	npm1a	10: 22034477 ~ 22045119 (+)
ENSDARG00000056913	pcolcea	10: 22789319 ~ 22803854 (-)
ENSDARG00000044254	anxa3b	10: 9247593 ~ 9269733 (-)
ENSDARG00000054155	pcna	10: 40821804 ~ 40826657 (-)
ENSDARG00000010516	rpl21	24: 21621654 ~ 21627293 (+)
ENSDARG00000099510	cnn3a	24: 31170362 ~ 31194847 (-)
ENSDARG00000040046	snai2	24: 35387517 ~ 35393533 (+)
ENSDARG00000017235	eif5a	24: 26481300 ~ 26485345 (-)
ENSDARG00000098589	cyb5a	24: 2836307 ~ 2843107 (-)
ENSDARG00000011404	fen1	24: 11908480 ~ 11921184 (+)
ENSDARG00000040041	mcm4	24: 35536664 ~ 35561672 (-)
ENSDARG00000034013	rgmd	22: 19640309 ~ 19646421 (+)
ENSDARG00000062152	chaf1a	22: 22276283 ~ 22301929 (-)
ENSDARG00000100588	rpl36	22: 3153876 ~ 3159456 (+)
ENSDARG00000023963	tpm4a	22: 15577827 ~ 15602760 (-)
ENSDARG00000002192	aspn	22: 10479965 ~ 10487490 (-)
ENSDARG00000102798	mcm2	22: 5632029 ~ 5655680 (-)
ENSDARG00000059367	mfap2	22: 22888 ~ 24275 (+)
ENSDARG00000039949	fibina	25: 35502552 ~ 35503409 (+)
ENSDARG00000051748	ccnd2a	25: 16973945 ~ 17239079 (-)
ENSDARG00000102748	CABZ01074745.1	KN149951.1: 442 ~ 4132 (+)
--	kiaa0101	--
--	krt18	--
--	metrnl	--
--	seph	--
--	sepp1a	--
--	cyr61	--
--	fam212aa	--
--	hn1l	--
--	lhfp	--
--	lsp1	--
--	rpl37.1	--
--	rpl37a	--
--	rpl41	--
--	si:ch211-39i22.1	--
--	tnw	--
--	zgc:56493	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Pharyngeal arch.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (1.5dpf)	Danio rerio	head	2	Pharyngeal arch	baseline	1.5dpf, untreatment	ENSDARG00000076010 (twist1b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	2	Pharyngeal arch	baseline	1.5dpf, untreatment	ENSDARG00000007407 (barx1)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (1.5dpf)	Danio rerio	head	2	Pharyngeal arch	baseline	1.5dpf, untreatment	ENSDARG00000011956 (dlx4a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (2dpf)	Danio rerio	head	2	Pharyngeal arch	baseline	2dpf, untreatment	ENSDARG00000105223 (pmp22a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (2dpf)	Danio rerio	head	3	Pharyngeal arch	baseline	2dpf, untreatment	ENSDARG00000059367 (mfap2)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Pharyngeal arch

Distribution of Pharyngeal arch in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences