Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
col1a2 | 19: 40983221 ~ 41002980 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells |
Melanoma cells (cluster: 4) |
marker |
DOI:10.7554/eLife.60005 |
|
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
Melanoma cells (cluster: 1) |
marker |
DOI:10.7554/eLife.60005 |
|
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) |
Stromal (cluster: 1) Stromal (cluster: 2) |
marker marker |
DOI:10.15252/embr.202050612 DOI:10.15252/embr.202050612 |
|
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) |
Stromal (cluster: 1) Stromal (cluster: 2) Stromal (cluster: 4) |
marker marker marker |
DOI:10.15252/embr.202050612 DOI:10.15252/embr.202050612 DOI:10.15252/embr.202050612 |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Endothelium (cluster: 15) Microglia (cluster: 18) |
potential marker potential marker |
NA NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Glia (cluster: 16) Epithelial cells (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant |
Melanoma cells (cluster: 6) |
potential marker |
NA |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 9) |
potential marker |
NA |
|
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Chondrocytes (cluster: 2) Chondrocytes (cluster: 6) Osteoblast (cluster: 7) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Chondrocytes (cluster: 5) Osteoblast (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry |
Dermal skeleton (cluster: 2) |
potential marker |
NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) Neuron (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
SHFP (cluster: 10) |
potential marker |
NA |
|
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
Skin (cluster: 10) |
potential marker |
NA |
|
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 2) Epithelial cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Cranial neural crest (cluster: 1) Epidermal cells (cluster: 9) |
potential marker potential marker |
NA NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 16) Somites (cluster: 18) Cranial neural crest (cluster: 19) Chondrocytes (cluster: 5) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Somites (cluster: 11) Epidermal cells (cluster: 12) Skeletal muscle cells (cluster: 15) Epidermal cells (cluster: 22) Cranial neural crest (cluster: 3) |
potential marker potential marker potential marker potential marker potential marker |
NA NA NA NA NA |
|
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Epidermal cells (cluster: 12) Placode (cluster: 5) |
potential marker potential marker |
NA NA |
|
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Epidermal cells (cluster: 11) Epidermal cells (cluster: 12) Placode (cluster: 4) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment |
Epidermal cells (cluster: 12) Epidermal cells (cluster: 3) Epidermal cells (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment |
Epidermal cells (cluster: 5) Epidermal cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Chondrocytes (cluster: 7) |
potential marker |
NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Pharyngeal arch (cluster: 3) |
potential marker |
NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Pectoral fin (cluster: 2) Epidermal cells (cluster: 4) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured |
Fibroblasts (cluster: 2) |
potential marker |
NA |
|
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Fibroblasts (cluster: 3) Fibroblasts (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury |
Fibroblasts (cluster: 10) Fibroblasts (cluster: 11) Fibroblasts (cluster: 4) Fibroblasts (cluster: 6) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury |
Fibroblasts (cluster: 3) Fibroblasts (cluster: 5) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured |
Fibroblasts (cluster: 6) |
potential marker |
NA |
|
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury |
Fibroblasts (cluster: 4) |
potential marker |
NA |
|
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury |
Fibroblasts (cluster: 4) Fibroblasts (cluster: 6) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury |
Fibroblasts (cluster: 1) |
potential marker |
NA |
|
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood |
Fibroblasts (cluster: 6) |
potential marker |
NA |
|
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | ||||
GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated |
Mesenchymal cells (cluster: 2) |
potential marker |
NA |
|
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS |
Mesenchymal cells (cluster: 1) |
potential marker |
NA |
|
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Epidermal cells (cluster: 1) Epidermal cells (cluster: 4) Epidermal cells (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Epidermal cells (cluster: 2) |
potential marker |
NA |
|
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Basal cells (cluster: 2) |
potential marker |
NA |
|
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours |
Basal cells (cluster: 4) |
potential marker |
NA |
|
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS |
Basal cells (cluster: 6) |
potential marker |
NA |
|
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Smooth muscle cells (cluster: 3) |
potential marker |
NA |
|
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Amacrine cells (cluster: 7) |
potential marker |
NA |
|
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Epidermal cells (cluster: 3) Fibroblasts (cluster: 5) |
potential marker potential marker |
NA NA |
|
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |
Epithelial cells (cluster: 1) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 6dpf, cd41:GFPlow-WT |
Epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 6dpf, cd41:GFPlow-runx1-/- |
Epithelial cells (cluster: 3) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 8) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 9) |
potential marker |
NA |
|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | ||||
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (12hpf) | embryo | baseline | 12hpf, FACS sorted sox10:nEOS cells |