GENE ID: ENSDARG00000012405


Symbol Location Gene type Genome version Species
col1a1a 3: 23221047 ~ 23239458 (+) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000012405 (col1a1a), yellow represents other genes.
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  • MARKER



    EXPRESSION


    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE151354 (wild type) cartilage baseline 21dpf, wild type Osteoblast (cluster: 12)
    marker
    DOI:10.7554/eLife.16415
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured Fibroblasts (cluster: 2)
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Fibroblasts (cluster: 3)
    Fibroblasts (cluster: 7)
    marker
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury Fibroblasts (cluster: 4)
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Fibroblasts (cluster: 3)
    Fibroblasts (cluster: 5)
    marker
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured Fibroblasts (cluster: 6)
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Fibroblasts (cluster: 4)
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Fibroblasts (cluster: 4)
    Fibroblasts (cluster: 6)
    marker
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury Fibroblasts (cluster: 1)
    marker
    DOI:10.1172/JCI74783, DOI:10.15252/embr.202152901
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Fibroblasts (cluster: 5)
    marker
    DOI:10.1371/journal.pone.0254024
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Microglia (cluster: 18)
    potential marker
    NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Glia (cluster: 16)
    potential marker
    NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Epithelial cells (cluster: 9)
    potential marker
    NA
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Chondrocytes (cluster: 2)
    Chondrocytes (cluster: 6)
    Osteoblast (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Chondrocytes (cluster: 5)
    Osteoblast (cluster: 6)
    potential marker
    potential marker
    NA
    NA
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry Dermal skeleton (cluster: 2)
    potential marker
    NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    Neuron (cluster: 6)
    potential marker
    potential marker
    NA
    NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    Neuron (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Epithelial cells (cluster: 4)
    potential marker
    NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Skin (cluster: 10)
    potential marker
    NA
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells Melanoma cells (cluster: 1)
    potential marker
    NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Cranial neural crest (cluster: 1)
    Epidermal cells (cluster: 24)
    Epidermal cells (cluster: 9)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 16)
    Somites (cluster: 18)
    Cranial neural crest (cluster: 19)
    Chondrocytes (cluster: 5)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Somites (cluster: 11)
    Epidermal cells (cluster: 12)
    Skeletal muscle cells (cluster: 15)
    Epidermal cells (cluster: 22)
    Cranial neural crest (cluster: 3)
    potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Epidermal cells (cluster: 11)
    Epidermal cells (cluster: 12)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 8)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Epidermal cells (cluster: 5)
    Epidermal cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Chondrocytes (cluster: 7)
    potential marker
    NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Pharyngeal arch (cluster: 3)
    potential marker
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Pectoral fin (cluster: 2)
    Epidermal cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Fibroblasts (cluster: 6)
    potential marker
    NA
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Epithelial cells (cluster: 8)
    potential marker
    NA
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated Epithelial cells (cluster: 12)
    potential marker
    NA
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Epidermal cells (cluster: 1)
    Epidermal cells (cluster: 4)
    Epidermal cells (cluster: 6)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Basal cells (cluster: 2)
    potential marker
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Basal cells (cluster: 4)
    potential marker
    NA
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Basal cells (cluster: 6)
    potential marker
    NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Amacrine cells (cluster: 7)
    potential marker
    NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Stromal (cluster: 1)
    Stromal (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Stromal (cluster: 1)
    Stromal (cluster: 2)
    Stromal (cluster: 4)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Epidermal cells (cluster: 7)
    Epidermal cells (cluster: 9)
    potential marker
    potential marker
    NA
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Epithelial cells (cluster: 4)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 1)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Epithelial cells (cluster: 7)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 3)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 8)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 9)
    potential marker
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment