DATASET ID: PRJNA754013 (zebrafish)


Basic information


Tissue / Organ hypothalamus
Experiment type baseline
Sample adult, male, female, untreatment
Source dataset ID SRR15422672
Project ID PRJNA754013
Species Danio rerio

Clustering Result


Marker Relationship


Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
1 Neuron ENSDARG00000033655 (stmn1b) protein_coding marker DOI:10.1038/s41559-021-01580-3
2 Neuron ENSDARG00000099744 (gap43) protein_coding marker DOI:10.1038/s41559-021-01580-3
3 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1038/s41559-021-01580-3
4 Ciliated ENSDARG00000058734 (prdx1) protein_coding marker DOI:10.1038/s41559-021-01580-3
5 Neuron ENSDARG00000020609 (snap25a) protein_coding marker DOI:10.1038/s41559-021-01580-3
6 Progenitors ENSDARG00000056729 (her4.2) protein_coding marker DOI:10.1038/s41559-021-01580-3
7 Macrophages ENSDARG00000058389 (ccl19a.1) protein_coding marker DOI:10.1038/s41559-021-01580-3
8 Oligodendrocyte precursor cells ENSDARG00000033845 (igsf9ba) protein_coding marker DOI:10.1038/s41559-021-01580-3
9 Endothelium ENSDARG00000035810 (rgcc) protein_coding marker DOI:10.1038/s41559-021-01580-3
10 Neuron ENSDARG00000038574 (scg2b) protein_coding marker DOI:10.1038/s41559-021-01580-3
11 Microglia ENSDARG00000092170 (apoc1) protein_coding marker DOI:10.1038/s41559-021-01580-3
12 Ependymal ENSDARG00000067831 (tbata) protein_coding marker DOI:10.1038/s41559-021-01580-3
13 Erythroid cells ENSDARG00000071361 (si:ch211-197g15.10) protein_coding marker DOI:10.1038/s41559-021-01580-3
14 Lymphocyte cells ENSDARG00000102100 (mrc1a) protein_coding marker DOI:10.1038/s41559-021-01580-3
15 Oligodendrocytes ENSDARG00000077257 (timd4) protein_coding marker DOI:10.1038/s41559-021-01580-3

Expression



  • The expression of marker genes of each cluster is shown in the figure above.
  • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)