Fish Single-cell RNA Database

CELL TYPE: Ciliated

Distribution of Ciliated in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
LOC103023547	LOC103023547	NC_035897.1: 8726331 ~ 8787049 (-)
ankmy2	ankmy2	NC_035897.1: 11296569 ~ 11303882 (+)
lrrc72	lrrc72	NC_035897.1: 11304590 ~ 11308672 (-)
LOC103047658	LOC103047658	NC_035898.1: 19680874 ~ 19753953 (+)
LOC103032739	LOC103032739	NC_035898.1: 30882104 ~ 30884340 (-)
LOC103037703	LOC103037703	NC_035899.1: 2244461 ~ 2259339 (+)
LOC103039037	LOC103039037	NC_035899.1: 15251579 ~ 15271031 (+)
insm1	insm1	NC_035899.1: 33508074 ~ 33511617 (+)
LOC103036422	LOC103036422	NC_035899.1: 42719549 ~ 42727065 (-)
LOC103032373	LOC103032373	NC_035899.1: 52525768 ~ 52554272 (-)
LOC103031412	LOC103031412	NC_035899.1: 60994927 ~ 61163598 (+)
hectd2	hectd2	NC_035900.1: 181069 ~ 229078 (+)
LOC103021465	LOC103021465	NC_035900.1: 4148188 ~ 4161856 (-)
LOC103031419	LOC103031419	NC_035901.1: 31910861 ~ 32095376 (+)
ccnd1	ccnd1	NC_035901.1: 32548038 ~ 32556926 (-)
unc119b	unc119b	NC_035902.1: 28716975 ~ 28728007 (+)
LOC103047383	LOC103047383	NC_035902.1: 31912039 ~ 31916431 (-)
LOC103035335	LOC103035335	NC_035902.1: 36296278 ~ 36331569 (+)
gpx3	gpx3	NC_035904.1: 2690738 ~ 2701134 (+)
LOC103027224	LOC103027224	NC_035904.1: 6541416 ~ 6559735 (+)
LOC103029755	LOC103029755	NC_035905.1: 7343193 ~ 7346450 (+)
LOC103038777	LOC103038777	NC_035906.1: 10617522 ~ 10632206 (+)
nes	nes	NC_035906.1: 11131139 ~ 11142620 (-)
LOC103029087	LOC103029087	NC_035906.1: 11982990 ~ 12018318 (-)
vim	vim	NC_035906.1: 14513488 ~ 14521140 (-)
grik3	grik3	NC_035906.1: 20357549 ~ 20505617 (+)
LOC103038671	LOC103038671	NC_035906.1: 21129752 ~ 21132360 (-)
riiad1	riiad1	NC_035907.1: 5590982 ~ 5593496 (-)
arl13b	arl13b	NC_035908.1: 8498410 ~ 8513655 (-)
LOC111193573	LOC111193573	NC_035908.1: 29149065 ~ 29159524 (+)
pde6d	pde6d	NC_035909.1: 181499 ~ 187677 (+)
rbm38	rbm38	NC_035909.1: 34330998 ~ 34340744 (+)
prdx5	prdx5	NC_035910.1: 11702191 ~ 11708039 (+)
LOC103024383	LOC103024383	NC_035911.1: 18739058 ~ 18768420 (+)
LOC103021519	LOC103021519	NC_035911.1: 25540761 ~ 25544523 (+)
LOC103023705	LOC103023705	NC_035912.1: 3029732 ~ 3034068 (-)
bmper	bmper	NC_035913.1: 16683315 ~ 16716276 (-)
pde9a	pde9a	NC_035915.1: 6348007 ~ 6386357 (-)
LOC107197807	LOC107197807	NC_035915.1: 9696731 ~ 9700337 (-)
LOC103030131	LOC103030131	NC_035915.1: 30040853 ~ 30050404 (-)
LOC103040667	LOC103040667	NC_035916.1: 6174814 ~ 6203180 (-)
alas1	alas1	NC_035918.1: 22349347 ~ 22362458 (-)
LOC103034806	LOC103034806	NC_035919.1: 10846081 ~ 10850259 (-)
LOC103033266	LOC103033266	NC_035920.1: 12893678 ~ 12901396 (-)
LOC107197304	LOC107197304	NC_035920.1: 28662183 ~ 28663924 (-)
LOC103040922	LOC103040922	NC_035920.1: 28683593 ~ 28693521 (+)
LOC103026596	LOC103026596	NW_019170708.1: 404550 ~ 420783 (-)
cunh15orf48	cunh15orf48	NW_019171364.1: 2185923 ~ 2190912 (+)
LOC103028671	LOC103028671	NW_019172410.1: 90209 ~ 108449 (+)
dnah10	dnah10	NW_019172819.1: 2462671 ~ 2571922 (+)
emid1	emid1	NW_019172819.1: 2582799 ~ 2711959 (+)
LOC103030147	LOC103030147	NW_019172823.1: 516664 ~ 518563 (+)
LOC103036228	LOC103036228	NW_019172855.1: 89545 ~ 117517 (+)
gda	gda	NW_019172860.1: 175172 ~ 207229 (-)
LOC103022939	LOC103022939	NW_019172876.1: 1124396 ~ 1284529 (-)
ca8	ca8	NW_019172910.1: 328598 ~ 357291 (-)
hexb	hexb	NW_019172913.1: 5539382 ~ 5562404 (+)
ENSDARG00000002131	celf2	4: 23886726 ~ 24031924 (-)
ENSDARG00000008867	rap1b	4: 18852821 ~ 18939338 (-)
ENSDARG00000038384	th2	4: 17380578 ~ 17391091 (-)
ENSDARG00000044125	txn	7: 24357231 ~ 24364826 (-)
ENSDARG00000035970	ptprn2	7: 40228422 ~ 40499386 (+)
ENSDARG00000017739	ak5l	5: 64177484 ~ 64203101 (-)
ENSDARG00000108939	FQ378016.1	5: 58487368 ~ 58512609 (+)
ENSDARG00000099441	cbx4	3: 18555899 ~ 18564030 (+)
ENSDARG00000070037	rgs8	6: 35459369 ~ 35488180 (-)
ENSDARG00000095896	pou3f3b	6: 14949950 ~ 14953352 (+)
ENSDARG00000100374	txnrd3	6: 1161224 ~ 1187749 (-)
ENSDARG00000058734	prdx1	2: 6104378 ~ 6115688 (-)
ENSDARG00000101766	ptmab	2: 5131964 ~ 5135125 (-)
ENSDARG00000031435	NA	1: 40263671 ~ 40270561 (+)
ENSDARG00000037746	actb1	1: 8649099 ~ 8653385 (-)
ENSDARG00000058464	rasd3	1: 9144958 ~ 9145896 (+)
ENSDARG00000053383	rprma	9: 4609746 ~ 4610777 (+)
ENSDARG00000103114	ndufa4l2a	9: 323460 ~ 327901 (-)
ENSDARG00000009823	pou3f1	16: 33593116 ~ 33595985 (+)
ENSDARG00000016494	ddc	16: 8298542 ~ 8342749 (-)
ENSDARG00000014571	ctnnb1	16: 6182501 ~ 6205790 (-)
ENSDARG00000058732	scgn	16: 6356460 ~ 6377672 (-)
ENSDARG00000095347	si:dkeyp-72h1.1	20: 18551657 ~ 18595559 (+)
ENSDARG00000076500	chgb	20: 45741566 ~ 45752016 (+)
ENSDARG00000091756	insm1a	20: 48482925 ~ 48485354 (-)
ENSDARG00000024746	hsp90aa1.2	20: 53967350 ~ 53981626 (-)
ENSDARG00000053301	insm1b	17: 41463942 ~ 41466145 (+)
ENSDARG00000070453	gch1	17: 15121977 ~ 15149275 (-)
ENSDARG00000041623	mt2	18: 17534627 ~ 17535979 (+)
ENSDARG00000086288	scg3	18: 39434589 ~ 39473055 (-)
ENSDARG00000096645	si:ch211-131k2.2	12: 5977777 ~ 5981577 (+)
ENSDARG00000021372	tob1b	12: 847187 ~ 850457 (-)
ENSDARG00000070491	hpcal4	19: 30517311 ~ 30565122 (-)
ENSDARG00000032614	msi2b	15: 30424645 ~ 30832897 (-)
ENSDARG00000000796	nr4a1	23: 32149269 ~ 32194397 (-)
ENSDARG00000102974	baz2a	23: 6673446 ~ 6722101 (-)
ENSDARG00000055092	pora	10: 35275965 ~ 35312885 (+)
ENSDARG00000068976	bsx	10: 29890535 ~ 29892486 (-)
ENSDARG00000015537	gad2	24: 6133147 ~ 6158933 (-)
ENSDARG00000093677	si:ch211-56a11.2	24: 32406894 ~ 32408404 (-)
ENSDARG00000029432	tph1a	25: 8139220 ~ 8160030 (-)
ENSDARG00000061416	c2cd4a	25: 32886143 ~ 32888115 (-)

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Ciliated.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA754013 (Choy surface)	Astyanax mexicanus	hypothalamus	15	Ciliated	baseline	male, female, adult, untreatment	pde6d (pde6d)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Choy surface)	Astyanax mexicanus	hypothalamus	15	Ciliated	baseline	male, female, adult, untreatment	insm1 (insm1)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Choy surface)	Astyanax mexicanus	hypothalamus	15	Ciliated	baseline	male, female, adult, untreatment	vim (vim)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Choy surface)	Astyanax mexicanus	hypothalamus	15	Ciliated	baseline	male, female, adult, untreatment	pde9a (pde9a)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Molino cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	pde6d (pde6d)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Molino cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	insm1 (insm1)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Molino cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	vim (vim)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Molino cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	pde9a (pde9a)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	pde6d (pde6d)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	insm1 (insm1)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	vim (vim)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave)	Astyanax mexicanus	hypothalamus	14	Ciliated	baseline	male, female, adult, untreatment	pde9a (pde9a)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	19	Ciliated	baseline	male, female, adult, untreatment	pde6d (pde6d)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	19	Ciliated	baseline	male, female, adult, untreatment	insm1 (insm1)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	19	Ciliated	baseline	male, female, adult, untreatment	vim (vim)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	19	Ciliated	baseline	male, female, adult, untreatment	pde9a (pde9a)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	22	Ciliated	baseline	male, female, adult, untreatment	pde6d (pde6d)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	22	Ciliated	baseline	male, female, adult, untreatment	insm1 (insm1)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	22	Ciliated	baseline	male, female, adult, untreatment	vim (vim)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	22	Ciliated	baseline	male, female, adult, untreatment	pde9a (pde9a)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (zebrafish)	Danio rerio	hypothalamus	4	Ciliated	baseline	adult, male, female, untreatment	ENSDARG00000058734 (prdx1)	marker	DOI:10.1038/s41559-021-01580-3

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Ciliated

Distribution of Ciliated in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences