DATASET ID: PRJNA754013 (Pachon cave)


Basic information


Tissue / Organ hypothalamus
Experiment type baseline
Sample male, female, adult, untreatment
Source dataset ID SRR15422680, SRR15422698
Project ID PRJNA754013
Species Astyanax mexicanus

Clustering Result


Marker Relationship


Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
1 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
2 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
3 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
4 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
5 Progenitors f3 (f3) protein_coding marker DOI:10.1038/s41559-021-01580-3
5 Progenitors ptn (ptn) protein_coding marker DOI:10.1038/s41559-021-01580-3
5 Progenitors slc1a2 (slc1a2) protein_coding marker DOI:10.1038/s41559-021-01580-3
5 Progenitors cebpd (cebpd) protein_coding marker DOI:10.1038/s41559-021-01580-3
6 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
7 Microglia apoc1 (apoc1) protein_coding marker DOI:10.1038/s41559-021-01580-3
8 Oligodendrocytes cldn19 (cldn19) protein_coding marker DOI:10.1038/s41559-021-01580-3
8 Oligodendrocytes cda (cda) protein_coding marker DOI:10.1038/s41559-021-01580-3
9 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
10 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
11 Leukocytes cxcr4 (cxcr4) protein_coding marker DOI:10.1038/s41559-021-01580-3
11 Leukocytes rps12 (rps12) protein_coding marker DOI:10.1038/s41559-021-01580-3
12 Macrophages cxcr4 (cxcr4) protein_coding marker DOI:10.1038/s41559-021-01580-3
12 Macrophages ncf2 (ncf2) protein_coding marker DOI:10.1038/s41559-021-01580-3
13 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
14 Ciliated pde6d (pde6d) protein_coding marker DOI:10.1038/s41559-021-01580-3
14 Ciliated insm1 (insm1) protein_coding marker DOI:10.1038/s41559-021-01580-3
14 Ciliated vim (vim) protein_coding marker DOI:10.1038/s41559-021-01580-3
14 Ciliated pde9a (pde9a) protein_coding marker DOI:10.1038/s41559-021-01580-3
15 Progenitors f3 (f3) protein_coding marker DOI:10.1038/s41559-021-01580-3
15 Progenitors ptn (ptn) protein_coding marker DOI:10.1038/s41559-021-01580-3
15 Progenitors slc1a2 (slc1a2) protein_coding marker DOI:10.1038/s41559-021-01580-3
15 Progenitors cebpd (cebpd) protein_coding marker DOI:10.1038/s41559-021-01580-3
16 Neuron rtn1 (rtn1) protein_coding marker DOI:10.1038/s41559-021-01580-3
17 Lymphocyte cells tfpi2 (tfpi2) protein_coding marker DOI:10.1038/s41559-021-01580-3
18 Oligodendrocyte precursor cells timp4 (timp4) protein_coding marker DOI:10.1038/s41559-021-01580-3
19 Ependymal krt18 (krt18) protein_coding marker DOI:10.1038/s41559-021-01580-3
20 Erythroid cells gpx1 (gpx1) protein_coding marker DOI:10.1038/s41559-021-01580-3

Expression



  • The expression of marker genes of each cluster is shown in the figure above.
  • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)