Fish Single-cell RNA Database

CELL TYPE: Ependymal

Distribution of Ependymal in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
krt18	krt18	NC_035911.1: 34697175 ~ 34703220 (-)
ENSDARG00000004794	ccdc146	4: 20177526 ~ 20199224 (+)
ENSDARG00000033443	mdm2	4: 23125689 ~ 23136195 (+)
ENSDARG00000017355	rsph9	4: 5645251 ~ 5652030 (-)
ENSDARG00000045705	meig1	4: 9609905 ~ 9611875 (+)
ENSDARG00000107526	smkr1	4: 4232562 ~ 4233275 (+)
ENSDARG00000103184	NA	7: 49800478 ~ 49845755 (+)
ENSDARG00000004874	spata6l	7: 69478914 ~ 69494504 (+)
ENSDARG00000012030	dnaaf1	7: 29012033 ~ 29017892 (+)
ENSDARG00000030463	tppp3	7: 35229645 ~ 35243976 (+)
ENSDARG00000077121	cyp26b1	7: 25323742 ~ 25348597 (+)
ENSDARG00000017676	mmp2	7: 35410050 ~ 35432901 (-)
ENSDARG00000015349	mfge8a	7: 48788147 ~ 48805181 (-)
ENSDARG00000068122	NA	5: 29752604 ~ 29780761 (-)
ENSDARG00000093783	si:dkey-70b23.2	5: 67662430 ~ 67664578 (+)
ENSDARG00000026726	anxa1a	5: 25578181 ~ 25583325 (-)
ENSDARG00000010770	sox19a	5: 24199180 ~ 24201437 (-)
ENSDARG00000075714	si:dkey-27p23.3	5: 57901168 ~ 57920600 (-)
ENSDARG00000013730	slc4a4a	5: 45746457 ~ 45877387 (-)
ENSDARG00000088753	cfap299	5: 39563301 ~ 39669846 (+)
ENSDARG00000099042	cfap157	5: 65157576 ~ 65171706 (+)
ENSDARG00000041723	NA	5: 33018764 ~ 33022014 (-)
ENSDARG00000024818	rilpl2	5: 69795204 ~ 69804433 (-)
ENSDARG00000030961	ak8	5: 29671681 ~ 29711948 (+)
ENSDARG00000078411	hspb15	5: 32321313 ~ 32323136 (-)
ENSDARG00000093569	bckdhbl	3: 16240984 ~ 16289826 (-)
ENSDARG00000025301	gfap	3: 31792441 ~ 31804481 (-)
ENSDARG00000103187	syce2	3: 13929860 ~ 13935837 (+)
ENSDARG00000058140	ttc25	3: 17910569 ~ 17928233 (+)
ENSDARG00000091579	si:ch211-66e2.5	3: 46457450 ~ 46473737 (+)
ENSDARG00000053455	ccdc103	3: 33420214 ~ 33422738 (-)
ENSDARG00000025428	socs3a	3: 57423137 ~ 57425961 (-)
ENSDARG00000101919	foxj1a	3: 60716904 ~ 60733722 (+)
ENSDARG00000101679	cfap52	6: 19667619 ~ 19683406 (-)
ENSDARG00000100584	ccdc40	6: 18251140 ~ 18292410 (+)
ENSDARG00000100003	glulb	6: 23809163 ~ 23813893 (+)
ENSDARG00000063009	catip	6: 13039951 ~ 13045541 (+)
ENSDARG00000006514	her6	6: 36551083 ~ 36552844 (-)
ENSDARG00000052428	si:dkey-43k4.3	6: 21576164 ~ 21582444 (-)
ENSDARG00000111474	cfap100	6: 22043127 ~ 22064158 (-)
ENSDARG00000013946	ivns1abpb	2: 23379401 ~ 23391266 (-)
ENSDARG00000038612	pih1d3	2: 44400770 ~ 44406125 (-)
ENSDARG00000053318	lrrc6	2: 43098237 ~ 43124747 (-)
ENSDARG00000039152	fbxo36b	2: 16482338 ~ 16485408 (+)
ENSDARG00000044501	viml	2: 50391331 ~ 50409763 (+)
ENSDARG00000103521	capsla	2: 53890006 ~ 53896300 (-)
ENSDARG00000016470	anxa5b	1: 22654875 ~ 22665098 (+)
ENSDARG00000069194	mycbpap	1: 57269441 ~ 57317797 (+)
ENSDARG00000092600	si:dkey-256e7.5	1: 17652388 ~ 17675037 (-)
ENSDARG00000027355	slc25a4	1: 17676745 ~ 17679089 (+)
ENSDARG00000051975	cd99	1: 33353174 ~ 33380340 (-)
ENSDARG00000028899	tekt4	1: 54613757 ~ 54622227 (-)
ENSDARG00000077652	lratb.2	1: 10118455 ~ 10124192 (+)
ENSDARG00000096594	lratb.1	1: 10110203 ~ 10119029 (+)
ENSDARG00000092240	si:ch211-243a20.3	1: 45351890 ~ 45366422 (+)
ENSDARG00000077928	ccdc173	9: 48219111 ~ 48231775 (+)
ENSDARG00000019260	dhrs9	9: 48706038 ~ 48736388 (-)
ENSDARG00000102261	NA	9: 16835900 ~ 16853462 (-)
ENSDARG00000076752	tmem67	16: 27564270 ~ 27581488 (+)
ENSDARG00000025254	s100a10b	16: 23397785 ~ 23399484 (+)
ENSDARG00000069815	dnali1	16: 33925743 ~ 33930759 (-)
ENSDARG00000042936	fam228a	20: 25350435 ~ 25355985 (+)
ENSDARG00000052343	spata18	20: 23160512 ~ 23171430 (-)
ENSDARG00000041799	cx43	20: 40715163 ~ 40720530 (-)
ENSDARG00000016605	pimr110	20: 42881104 ~ 42885820 (+)
ENSDARG00000010710	msi1	8: 39607466 ~ 39647216 (+)
ENSDARG00000058940	si:ch211-248e11.2	8: 11542852 ~ 11550273 (-)
ENSDARG00000093549	selenop	8: 31435452 ~ 31443334 (+)
ENSDARG00000034457	si:ch211-163l21.7	8: 23781028 ~ 23783633 (-)
ENSDARG00000068855	si:ch211-163l21.10	8: 23809843 ~ 23826084 (+)
ENSDARG00000029859	armh1	8: 18214081 ~ 18229209 (-)
ENSDARG00000053644	got1l1	8: 37755099 ~ 37772150 (+)
ENSDARG00000074323	efcab2	17: 11500628 ~ 11505070 (+)
ENSDARG00000094627	NA	17: 24602633 ~ 24603925 (-)
ENSDARG00000071360	morn2	17: 24681280 ~ 24684687 (-)
ENSDARG00000007697	fabp7a	17: 15433518 ~ 15435887 (+)
ENSDARG00000087556	pacrg	17: 27545183 ~ 27706743 (+)
ENSDARG00000088247	si:ch1073-303k11.2	14: 1111332 ~ 1121480 (+)
ENSDARG00000053262	atp1b4	14: 33458294 ~ 33469953 (+)
ENSDARG00000014233	sept8b	14: 49040190 ~ 49063157 (-)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000040469	enpp6	14: 4047215 ~ 4076480 (-)
ENSDARG00000036189	spata4	14: 36393854 ~ 36397876 (-)
ENSDARG00000041215	cetn4	14: 1348065 ~ 1355544 (-)
ENSDARG00000053744	dcdc2b	13: 33304187 ~ 33314758 (+)
ENSDARG00000069363	NA	13: 29404218 ~ 29406534 (-)
ENSDARG00000039041	sfrp5	13: 39911551 ~ 39947335 (-)
ENSDARG00000068678	iqcg	18: 27843776 ~ 27897217 (-)
ENSDARG00000092489	si:ch73-103b9.2	18: 29958653 ~ 29962234 (-)
ENSDARG00000068629	cd151l	18: 30998472 ~ 31016439 (+)
ENSDARG00000021462	daw1	18: 46382484 ~ 46394080 (+)
ENSDARG00000042396	odf3b	18: 7611298 ~ 7622892 (+)
ENSDARG00000068103	cfap45	18: 35173683 ~ 35197599 (+)
ENSDARG00000088290	foxj1b	12: 20149305 ~ 20157014 (+)
ENSDARG00000096777	si:ch73-81k8.2	12: 28899760 ~ 28910434 (-)
ENSDARG00000099742	heatr1	12: 9619909 ~ 9700605 (-)
ENSDARG00000096637	si:dkey-11c5.11	12: 27236871 ~ 27242533 (-)
ENSDARG00000021806	zfp36l2	12: 25376639 ~ 25380028 (-)
ENSDARG00000101848	dydc2	12: 47783814 ~ 47793857 (-)
ENSDARG00000067831	tbata	12: 47907277 ~ 47929058 (+)
ENSDARG00000061377	efcab1	19: 40182641 ~ 40186328 (-)
ENSDARG00000056934	hepacama	15: 22311803 ~ 22325973 (+)
ENSDARG00000101331	tekt1	15: 33865312 ~ 33878283 (+)
ENSDARG00000099361	si:dkey-30e9.6	15: 34062460 ~ 34067297 (+)
ENSDARG00000068726	masp1	15: 36187434 ~ 36223417 (+)
ENSDARG00000068719	gmnc	15: 36309070 ~ 36316825 (+)
ENSDARG00000040668	lrrc51	15: 44053244 ~ 44062824 (+)
ENSDARG00000070868	cfap126	23: 19977120 ~ 19981813 (+)
ENSDARG00000055739	ribc1	23: 28685266 ~ 28692581 (-)
ENSDARG00000089578	xrra1	21: 21782331 ~ 21791098 (-)
ENSDARG00000032885	si:ch211-226m7.4	11: 28620683 ~ 28631342 (+)
ENSDARG00000090297	ldlrad2	11: 36477481 ~ 36489816 (+)
ENSDARG00000033610	morn5	10: 9397305 ~ 9410068 (-)
ENSDARG00000020158	spag6	24: 17269849 ~ 17279904 (+)
ENSDARG00000058370	ropn1l	24: 22021675 ~ 22031079 (+)
ENSDARG00000010008	vim	24: 32176155 ~ 32192681 (+)
ENSDARG00000030095	ccdc78	24: 37902687 ~ 37921940 (+)
ENSDARG00000031248	enkur	24: 6673200 ~ 6678640 (-)
ENSDARG00000087303	cebpd	24: 35564668 ~ 35565927 (+)
ENSDARG00000092662	dnaaf3	24: 36995295 ~ 37003577 (-)
ENSDARG00000044135	cenpp	22: 10440991 ~ 10514343 (+)
ENSDARG00000057598	s100b	22: 13846130 ~ 13857729 (-)
ENSDARG00000042272	tmem231	25: 34845115 ~ 34859819 (+)
ENSDARG00000092825	si:dkey-42p14.3	25: 26895394 ~ 26899520 (+)
ENSDARG00000003216	anxa2a	25: 34013093 ~ 34027440 (+)
ENSDARG00000075177	ribc2	25: 16747475 ~ 16755340 (-)

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Ependymal.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA754013 (Molino cave)	Astyanax mexicanus	hypothalamus	16	Ependymal	baseline	male, female, adult, untreatment	krt18 (krt18)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Pachon cave)	Astyanax mexicanus	hypothalamus	19	Ependymal	baseline	male, female, adult, untreatment	krt18 (krt18)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (Tinaja cave)	Astyanax mexicanus	hypothalamus	21	Ependymal	baseline	male, female, adult, untreatment	krt18 (krt18)	marker	DOI:10.1038/s41559-021-01580-3
PRJNA754013 (zebrafish)	Danio rerio	hypothalamus	12	Ependymal	baseline	adult, male, female, untreatment	ENSDARG00000067831 (tbata)	marker	DOI:10.1038/s41559-021-01580-3

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Ependymal

Distribution of Ependymal in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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