Fish Single-cell RNA Database

GENE ID: ENSDARG00000042396

Symbol	Location	Gene type	Genome version	Species
odf3b	18: 7611298 ~ 7622892 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042396 (odf3b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000087962	rpap3	4: 966061 ~ 983242 (+)
ENSDARG00000014577	rhpn2	7: 38349665 ~ 38393421 (+)
ENSDARG00000004196	tnfsf10l	7: 22911610 ~ 22956889 (-)
ENSDARG00000087352	dnah2	7: 21321317 ~ 21626580 (+)
ENSDARG00000013730	slc4a4a	5: 45746457 ~ 45877387 (-)
ENSDARG00000070839	evi5b	6: 29011911 ~ 29086473 (-)
ENSDARG00000103277	cyp24a1	6: 55852274 ~ 55864687 (-)
ENSDARG00000077666	evi5a	2: 10709557 ~ 10760516 (+)
ENSDARG00000052766	NA	1: 45217425 ~ 45282774 (+)
ENSDARG00000070448	grk4	1: 11902579 ~ 11973341 (-)
ENSDARG00000037276	map9	1: 25737767 ~ 25749888 (-)
ENSDARG00000077620	cdca7a	9: 2879763 ~ 2892250 (-)
ENSDARG00000095577	cybrd1	9: 3490824 ~ 3496579 (-)
ENSDARG00000076546	trhra	16: 38818864 ~ 38826777 (+)
ENSDARG00000028017	tp53inp1	16: 40560622 ~ 40569769 (+)
ENSDARG00000044685	nr0b2a	16: 54875530 ~ 54880550 (+)
ENSDARG00000052454	rhpn1	20: 52233981 ~ 52271262 (-)
ENSDARG00000020114	slc20a1a	8: 31057115 ~ 31075015 (-)
ENSDARG00000058058	igf3	8: 13978486 ~ 13985032 (-)
ENSDARG00000005814	klhl10a	17: 4386649 ~ 4396692 (-)
ENSDARG00000043584	ifit15	17: 23607195 ~ 23609210 (-)
ENSDARG00000014233	sept8b	14: 49040190 ~ 49063157 (-)
ENSDARG00000015355	fosl1a	14: 30739476 ~ 30747686 (-)
ENSDARG00000013855	slc12a3	18: 17583479 ~ 17598755 (+)
ENSDARG00000042396	odf3b	18: 7611298 ~ 7622892 (+)
ENSDARG00000088290	foxj1b	12: 20149305 ~ 20157014 (+)
ENSDARG00000102756	nr0b2b	19: 14153486 ~ 14155781 (-)
ENSDARG00000103765	stpg1	19: 4016702 ~ 4023050 (-)
ENSDARG00000036159	trhrb	19: 22727940 ~ 22731812 (+)
ENSDARG00000006174	lrrc23	23: 20127883 ~ 20133994 (-)
ENSDARG00000075301	gsdf	21: 198269 ~ 202014 (+)
ENSDARG00000060734	hesx1	11: 42600731 ~ 42635440 (+)
ENSDARG00000032801	grk5	10: 2715548 ~ 2755378 (+)
ENSDARG00000020158	spag6	24: 17269849 ~ 17279904 (+)
ENSDARG00000079110	cluap1	24: 37466770 ~ 37484123 (-)
ENSDARG00000099959	smyhc1	24: 40656510 ~ 40668208 (-)
ENSDARG00000058346	sass6	22: 10735909 ~ 10752471 (-)
ENSDARG00000013438	sycp3	25: 19578048 ~ 19585010 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	Ependymal (cluster: 12)	potential marker	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Neuronal progenitor (cluster: 16)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-	Epidermal cells (cluster: 10)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000042396

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences