Fish Single-cell RNA Database

GENE ID: ENSDARG00000099959

Symbol	Location	Gene type	Genome version	Species
smyhc1	24: 40656510 ~ 40668208 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000099959 (smyhc1), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045822	tnnt2e	4: 7508316 ~ 7544687 (+)
ENSDARG00000032242	tnnt2c	4: 12031958 ~ 12033866 (+)
ENSDARG00000033683	tpma	7: 29951997 ~ 29962080 (+)
ENSDARG00000001431	actn3b	7: 6969909 ~ 7133475 (+)
ENSDARG00000020574	atp2a1	3: 26081343 ~ 26157066 (+)
ENSDARG00000053254	mylpfa	3: 32813048 ~ 32818607 (-)
ENSDARG00000104587	srl	3: 12128117 ~ 12187245 (-)
ENSDARG00000030975	ccdc80l1	6: 16406723 ~ 16423323 (+)
ENSDARG00000042245	myl13	2: 2470687 ~ 2481947 (+)
ENSDARG00000036371	acta1a	1: 53945934 ~ 53953532 (+)
ENSDARG00000028213	ttn.2	9: 42894845 ~ 43073960 (-)
ENSDARG00000032630	neb	9: 22805138 ~ 22892838 (-)
ENSDARG00000014196	myl1	9: 38994232 ~ 39005317 (-)
ENSDARG00000000563	ttn.1	9: 42732992 ~ 42873700 (-)
ENSDARG00000002445	prdm1a	16: 7430998 ~ 7443388 (-)
ENSDARG00000057911	NA	20: 9970786 ~ 9980318 (-)
ENSDARG00000042535	actc1a	20: 29476852 ~ 29483514 (-)
ENSDARG00000074168	tasor2	8: 11173794 ~ 11202500 (-)
ENSDARG00000020114	slc20a1a	8: 31057115 ~ 31075015 (-)
ENSDARG00000055158	prox1a	17: 32822588 ~ 32865788 (-)
ENSDARG00000099197	actc1b	17: 117024 ~ 125091 (-)
ENSDARG00000013855	slc12a3	18: 17583479 ~ 17598755 (+)
ENSDARG00000042396	odf3b	18: 7611298 ~ 7622892 (+)
ENSDARG00000005162	tpm3	19: 10985369 ~ 11031394 (-)
ENSDARG00000076126	actc1a	19: 47549568 ~ 47555956 (-)
ENSDARG00000037539	tnnc1b	23: 20110086 ~ 20112596 (+)
ENSDARG00000070835	tnnc2	23: 20422661 ~ 20427299 (+)
ENSDARG00000022560	clcnk	23: 24272421 ~ 24291927 (+)
ENSDARG00000044695	ccdc80l2	21: 19834072 ~ 19841870 (+)
ENSDARG00000104682	tpm2	10: 6318227 ~ 6375394 (+)
ENSDARG00000062592	myl10	10: 33171501 ~ 33179988 (+)
ENSDARG00000099959	smyhc1	24: 40656510 ~ 40668208 (-)
ENSDARG00000092999	tnni4b.1	25: 20077225 ~ 20087924 (+)
ENSDARG00000079111	actc1c	25: 14087045 ~ 14125498 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	Adaxial cells (cluster: 14)	potential marker	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Skeletal muscle cells (cluster: 12)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 20)	potential marker	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 19)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Muscle cells (cluster: 16)	potential marker	NA
GSE152982 (wild type)	trunk	baseline	1.25dpf, untreatment	Slow muscle (cluster: 4)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Skeletal muscle cells (cluster: 38)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000099959

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences