Fish Single-cell RNA Database

GENE ID: ENSDARG00000057911

Symbol	Location	Gene type	Genome version	Species
NA	20: 9970786 ~ 9980318 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000057911 (NA), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000035438	myhc4	5: 32221755 ~ 32233862 (+)
ENSDARG00000032976	cmlc1	5: 64167620 ~ 64168415 (-)
ENSDARG00000045262	gsnb	5: 63294865 ~ 63302944 (-)
ENSDARG00000075867	mrtfaa	3: 24708685 ~ 24765127 (+)
ENSDARG00000020235	sept9a	3: 34452336 ~ 34586403 (-)
ENSDARG00000102415	scinla	6: 24090950 ~ 24103666 (-)
ENSDARG00000079564	myh7	2: 24252987 ~ 24270062 (-)
ENSDARG00000079782	myh7l	2: 24274293 ~ 24289726 (-)
ENSDARG00000019128	tpm4b	2: 55300425 ~ 55337585 (-)
ENSDARG00000057911	NA	20: 9970786 ~ 9980318 (-)
ENSDARG00000014106	cfl2	17: 10007071 ~ 10025234 (-)
ENSDARG00000012972	cfl1l	13: 33606739 ~ 33609427 (+)
ENSDARG00000076229	mrtfab	12: 18718065 ~ 18787459 (+)
ENSDARG00000104713	zgc:165653	12: 48634927 ~ 48656276 (+)
ENSDARG00000011459	gsna	21: 17572421 ~ 17603218 (-)
ENSDARG00000104682	tpm2	10: 6318227 ~ 6375394 (+)
ENSDARG00000099959	smyhc1	24: 40656510 ~ 40668208 (-)
ENSDARG00000001909	vill	24: 20418959 ~ 20444844 (-)
ENSDARG00000002988	tnnt2d	25: 20215964 ~ 20226584 (+)
ENSDARG00000087402	tpm1	25: 33192404 ~ 33250323 (+)
ENSDARG00000111606	smyhc2	KZ115969.1: 6244 ~ 8678 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Enteric smooth muscle (cluster: 23)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 17) Skeletal muscle cells (cluster: 20)	potential marker potential marker	NA NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Skeletal muscle cells (cluster: 15) Skeletal muscle cells (cluster: 19) Heart primordium (cluster: 30)	potential marker potential marker potential marker	NA NA NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Heart primordium (cluster: 2)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Heart primordium (cluster: 10)	potential marker	NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Heart primordium (cluster: 7)	potential marker	NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Heart primordium (cluster: 5)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Heart primordium (cluster: 4)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Cardiomyocytes (cluster: 8)	potential marker	NA
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000057911

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences