Fish Single-cell RNA Database

GENE ID: ENSDARG00000068976

Symbol	Location	Gene type	Genome version	Species
bsx	10: 29890535 ~ 29892486 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000068976 (bsx), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000011582	sox5	4: 16982249 ~ 17055950 (-)
ENSDARG00000070220	pou3f2a	4: 5741733 ~ 5744457 (+)
ENSDARG00000069089	agrp	7: 35080490 ~ 35083585 (-)
ENSDARG00000015536	sox6	7: 27250012 ~ 27454645 (+)
ENSDARG00000089262	pbx3a	5: 5302932 ~ 5394468 (-)
ENSDARG00000039626	nrgna	5: 58372164 ~ 58382655 (+)
ENSDARG00000052387	pou2f3	5: 58550291 ~ 58602307 (+)
ENSDARG00000096241	ighv7-1	3: 34076378 ~ 34076807 (-)
ENSDARG00000096430	ighv9-1	3: 34069166 ~ 34069637 (-)
ENSDARG00000096388	ighv5-3	3: 34098259 ~ 34098731 (-)
ENSDARG00000096345	ighv4-5	3: 34096513 ~ 34096987 (-)
ENSDARG00000087381	tcf23	6: 9651703 ~ 9657694 (+)
ENSDARG00000031664	sox21a	6: 7414215 ~ 7415343 (+)
ENSDARG00000100494	pbx1a	2: 18698388 ~ 18830794 (-)
ENSDARG00000025495	nhlh2	9: 32978302 ~ 32981660 (+)
ENSDARG00000008540	sox21b	9: 53276356 ~ 53277722 (+)
ENSDARG00000007996	pou2f1b	9: 34319333 ~ 34378674 (+)
ENSDARG00000042856	itpka	17: 31363000 ~ 31394615 (+)
ENSDARG00000056130	neurog1	14: 26703331 ~ 26704829 (-)
ENSDARG00000096716	hmx3b	12: 49153888 ~ 49154934 (-)
ENSDARG00000036816	pou2f2a	19: 6213680 ~ 6303099 (-)
ENSDARG00000057586	sall3b	19: 22062202 ~ 22074081 (+)
ENSDARG00000091658	sptssb	15: 1679962 ~ 1687204 (-)
ENSDARG00000074030	myt1a	23: 30767310 ~ 30787932 (-)
ENSDARG00000102879	myt1b	23: 7762033 ~ 7826849 (-)
ENSDARG00000011570	pou6f1	23: 33681677 ~ 33710029 (-)
ENSDARG00000044774	pou5f3	21: 13685853 ~ 13690712 (-)
ENSDARG00000044375	zgc:158291	21: 38312549 ~ 38315241 (+)
ENSDARG00000068976	bsx	10: 29890535 ~ 29892486 (-)
ENSDARG00000077622	si:ch211-263p13.7	10: 26813710 ~ 26822190 (+)
ENSDARG00000089327	BX120005.2	10: 29840725 ~ 29848513 (+)
ENSDARG00000086362	pou6f2	24: 10039165 ~ 10272212 (+)
--	st18	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Pineal gland (cluster: 23)	potential marker	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	Ciliated (cluster: 4)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000068976

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences