GENE ID: ENSDARG00000011407


Symbol Location Gene type Genome version Species
col2a1b 11: 32007 ~ 55224 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000011407 (col2a1b), yellow represents other genes.
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  • MARKER



    EXPRESSION


    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Chondrocytes (cluster: 2)
    Chondrocytes (cluster: 6)
    marker
    marker
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Chondrocytes (cluster: 2)
    Chondrocytes (cluster: 3)
    Chondrocytes (cluster: 5)
    marker
    marker
    marker
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    DOI:10.1002/jbmr.4042
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Microglia (cluster: 18)
    potential marker
    NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    GSE151354 (wild type) cartilage baseline 21dpf, wild type Chondrocytes (cluster: 1)
    Chondrocytes (cluster: 3)
    potential marker
    potential marker
    NA
    NA
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant Chondrocytes (cluster: 1)
    potential marker
    NA
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 6)
    potential marker
    NA
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neuron (cluster: 7)
    potential marker
    NA
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo Mesoderm (cluster: 9)
    potential marker
    NA
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells More-differentiated SHFPs (cluster: 3)
    potential marker
    NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells More-differentiated SHFPs (cluster: 3)
    Less-differentiated SHFPs (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Skin (cluster: 10)
    potential marker
    NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Cranial neural crest (cluster: 1)
    Chondrocytes (cluster: 6)
    Epidermal cells (cluster: 9)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 16)
    Somites (cluster: 18)
    Cranial neural crest (cluster: 27)
    Chondrocytes (cluster: 5)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Somites (cluster: 11)
    Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 22)
    Floor plate (cluster: 23)
    Cranial neural crest (cluster: 3)
    potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    NA
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Mesoderm (cluster: 7)
    potential marker
    NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Epidermal cells (cluster: 6)
    Mesoderm (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Epidermal cells (cluster: 12)
    Mesoderm (cluster: 8)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Mesoderm (cluster: 10)
    Epidermal cells (cluster: 11)
    Epidermal cells (cluster: 12)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment Epidermal cells (cluster: 8)
    potential marker
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Epidermal cells (cluster: 7)
    potential marker
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Chondrocytes (cluster: 7)
    potential marker
    NA
    GSE158142 (2dpf) head baseline 2dpf, untreatment Pharyngeal arch (cluster: 3)
    potential marker
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Epidermal cells (cluster: 4)
    Chondrocytes (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Chondrocytes (cluster: 7)
    potential marker
    NA
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Epidermal cells (cluster: 1)
    Epidermal cells (cluster: 4)
    Epidermal cells (cluster: 6)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Epidermal cells (cluster: 2)
    potential marker
    NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Basal cells (cluster: 2)
    potential marker
    NA
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Amacrine cells (cluster: 7)
    potential marker
    NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Notochord (cluster: 15)
    potential marker
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Chondrocranium cells (cluster: 10)
    Chondrocytes (cluster: 16)
    Pronephros (cluster: 28)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Chondrocytes (cluster: 3)
    Epithelial cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 1)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT Epithelial cells (cluster: 7)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/- Epithelial cells (cluster: 3)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Epidermal cells (cluster: 9)
    potential marker
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment
    GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
    GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
    GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
    GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
    GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
    GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment