Fish Single-cell RNA Database

CELL TYPE: Notochord

Distribution of Notochord in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000056950	epyc	4: 16317296 ~ 16334362 (-)
ENSDARG00000051957	selenom	5: 69278089 ~ 69287567 (+)
ENSDARG00000004392	hdr	5: 27404946 ~ 27415081 (+)
ENSDARG00000015947	matn4	6: 52790049 ~ 52846194 (+)
ENSDARG00000105116	p4hb	6: 18203464 ~ 18228358 (-)
ENSDARG00000096905	si:ch73-23l24.1	6: 15250672 ~ 15259419 (+)
ENSDARG00000076904	loxl5b	2: 56012016 ~ 56041890 (+)
ENSDARG00000092383	snorc	2: 48182604 ~ 48196092 (-)
ENSDARG00000100133	cnmd	9: 53725128 ~ 53744243 (+)
ENSDARG00000040118	zgc:113232	16: 38360002 ~ 38389883 (+)
ENSDARG00000053133	b3gnt7l	8: 22289320 ~ 22290886 (+)
ENSDARG00000069093	col2a1a	8: 21195420 ~ 21219473 (+)
ENSDARG00000078052	emilin3a	8: 22962690 ~ 22965916 (-)
ENSDARG00000031483	col9a1b	13: 39119460 ~ 39160018 (-)
ENSDARG00000074745	zmp:0000000760	13: 1726953 ~ 1786145 (+)
ENSDARG00000054864	aplp2	18: 44364530 ~ 44527124 (-)
ENSDARG00000060457	pmp22b	12: 37275336 ~ 37299671 (-)
ENSDARG00000055527	cmn	12: 13118540 ~ 13164249 (+)
ENSDARG00000024492	col9a2	19: 38422059 ~ 38467554 (+)
ENSDARG00000012422	col11a2	19: 7179740 ~ 7225206 (-)
ENSDARG00000019949	serpinh1b	15: 29382454 ~ 29388012 (-)
ENSDARG00000037845	col9a3	23: 495514 ~ 524780 (-)
ENSDARG00000058371	krt5	23: 10173196 ~ 10177458 (-)
ENSDARG00000058358	krt8	23: 10249626 ~ 10254288 (-)
ENSDARG00000074719	rab38c	21: 30549512 ~ 30560490 (+)
ENSDARG00000011407	col2a1b	11: 32007 ~ 55224 (-)
ENSDARG00000026165	col11a1a	24: 28764021 ~ 28893303 (-)
ENSDARG00000005485	ucmab	25: 7982979 ~ 7988936 (+)
--	krt18	--
--	emilin3	--
--	hfe2	--
--	ta	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Notochord.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE158142 (12hpf)	Danio rerio	head	15	Notochord	baseline	12hpf, 6 somites, untreatment	ENSDARG00000078052 (emilin3a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	15	Notochord	baseline	12hpf, 6 somites, untreatment	ENSDARG00000076904 (loxl5b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	15	Notochord	baseline	12hpf, 6 somites, untreatment	-- (hfe2)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE152982 (wild type)	Danio rerio	trunk	15	Notochord	baseline	1.25dpf, untreatment	ENSDARG00000031483 (col9a1b)	marker	DOI:10.1371/journal.pone.0254024

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Notochord

Distribution of Notochord in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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