Fish Single-cell RNA Database

GENE ID: ENSDARG00000014670

Symbol	Location	Gene type	Genome version	Species
colgalt2	8: 19364568 ~ 19395110 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000014670 (colgalt2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000027799	ucmaa	4: 7841627 ~ 7850489 (+)
ENSDARG00000052061	col4a6	7: 50920437 ~ 51102479 (-)
ENSDARG00000052063	col4a5	7: 51103232 ~ 51194430 (+)
ENSDARG00000099930	col27a1b	5: 65180792 ~ 65319387 (-)
ENSDARG00000098294	col5a3a	3: 53773256 ~ 53919463 (+)
ENSDARG00000024847	col5a2b	6: 11438972 ~ 11495601 (+)
ENSDARG00000009014	col11a1b	2: 15389193 ~ 15563194 (-)
ENSDARG00000069415	col17a1a	1: 49568335 ~ 49605854 (+)
ENSDARG00000058270	NA	1: 58013076 ~ 58036509 (-)
ENSDARG00000076321	col28a2a	9: 48297412 ~ 48371379 (-)
ENSDARG00000005762	col14a1a	16: 14684916 ~ 15050842 (+)
ENSDARG00000040118	zgc:113232	16: 38360002 ~ 38389883 (+)
ENSDARG00000087087	col28a1b	16: 47308856 ~ 47344147 (+)
ENSDARG00000014670	colgalt2	8: 19364568 ~ 19395110 (-)
ENSDARG00000059746	plod1a	8: 47850073 ~ 47895817 (+)
ENSDARG00000069093	col2a1a	8: 21195420 ~ 21219473 (+)
ENSDARG00000078322	col12a1a	17: 49785495 ~ 49978986 (-)
ENSDARG00000096073	col19a1	13: 38814521 ~ 38856156 (+)
ENSDARG00000076163	col19a1	13: 38990939 ~ 39115963 (+)
ENSDARG00000074745	zmp:0000000760	13: 1726953 ~ 1786145 (+)
ENSDARG00000060893	col8a2	19: 35496282 ~ 35596207 (-)
ENSDARG00000024492	col9a2	19: 38422059 ~ 38467554 (+)
ENSDARG00000012422	col11a2	19: 7179740 ~ 7225206 (-)
ENSDARG00000057408	CABZ01067232.1	15: 45668851 ~ 45674213 (-)
ENSDARG00000037845	col9a3	23: 495514 ~ 524780 (-)
ENSDARG00000076317	plod3	23: 44843860 ~ 44879214 (-)
ENSDARG00000074908	col6a1	11: 33996526 ~ 34065718 (-)
ENSDARG00000074848	smim7	11: 7151579 ~ 7156693 (-)
ENSDARG00000011407	col2a1b	11: 32007 ~ 55224 (-)
ENSDARG00000011821	plod2	24: 5237709 ~ 5314707 (+)
ENSDARG00000005485	ucmab	25: 7982979 ~ 7988936 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Epidermal cells (cluster: 7) Epidermal cells (cluster: 9)	potential marker potential marker	NA NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE131136 (all)	trunk, skin	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000014670

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences