GENE ID: ENSDARG00000059906


Symbol Location Gene type Genome version Species
sdc4 6: 52663097 ~ 52675630 (-) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000059906 (sdc4), yellow represents other genes.
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  • MARKER



    EXPRESSION


    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Progenitors (cluster: 11)
    Radial glia (cluster: 13)
    Endothelium (cluster: 15)
    Microglia (cluster: 18)
    Progenitors (cluster: 8)
    potential marker
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Microglia (cluster: 4)
    potential marker
    NA
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment Chondrocytes (cluster: 4)
    potential marker
    NA
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Epithelial cells (cluster: 6)
    potential marker
    NA
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Eye (endothelial, progenitors) (cluster: 13)
    Glia (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Epithelial cells (cluster: 12)
    Neuron (cluster: 15)
    Fibroblasts (cluster: 16)
    Epidermal cells (cluster: 9)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Fibroblasts (cluster: 14)
    Myeloid cells (cluster: 7)
    Epithelial cells (cluster: 9)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Chondrocytes (cluster: 2)
    potential marker
    NA
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells More-differentiated SHFPs (cluster: 3)
    potential marker
    NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells More-differentiated SHFPs (cluster: 3)
    Differentiated art.ventricle (cluster: 4)
    Less-differentiated SHFPs (cluster: 5)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells Oligodendrocyte precursor cells (cluster: 4)
    potential marker
    NA
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Cranial neural crest (cluster: 1)
    Chondrocytes (cluster: 6)
    Epidermal cells (cluster: 9)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 16)
    Neuroblast (cluster: 2)
    Chondrocytes (cluster: 5)
    Cranial neural crest (cluster: 6)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuroblast (cluster: 1)
    Neuroblast (cluster: 10)
    Cranial neural crest (cluster: 3)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Pharyngeal arch (cluster: 2)
    Chondrocytes (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Pectoral fin (cluster: 2)
    potential marker
    NA
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured Macrophages (cluster: 6)
    potential marker
    NA
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Macrophages (cluster: 2)
    Coronary endothelial cells (cluster: 5)
    Macrophages (cluster: 6)
    Macrophages (cluster: 9)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury Macrophages (cluster: 1)
    potential marker
    NA
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Macrophages (cluster: 6)
    potential marker
    NA
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured Macrophages (cluster: 7)
    potential marker
    NA
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Macrophages (cluster: 2)
    Macrophages (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Macrophages (cluster: 2)
    potential marker
    NA
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury Macrophages (cluster: 6)
    potential marker
    NA
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Endocardial cells (cluster: 3)
    potential marker
    NA
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Smooth muscle cells (cluster: 6)
    potential marker
    NA
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Lymphocyte cells (cluster: 14)
    Progenitors (cluster: 6)
    Endothelium (cluster: 9)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Epithelial cells (cluster: 6)
    potential marker
    NA
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated Mesenchymal cells (cluster: 3)
    potential marker
    NA
    GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
    PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Epidermal cells (cluster: 2)
    potential marker
    NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Basal cells (cluster: 2)
    Neuronal progenitor (cluster: 4)
    Endothelium (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Endothelium (cluster: 3)
    Basal cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Endothelium (cluster: 4)
    Basal cells (cluster: 6)
    potential marker
    potential marker
    NA
    NA
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Prop1+ group (cluster: 9)
    potential marker
    NA
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Prop1+ group (cluster: 11)
    potential marker
    NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 3)
    potential marker
    NA
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
    GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Muller glia cells (cluster: 5)
    Amacrine cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Muller glia cells (cluster: 10)
    Muller glia cells (cluster: 4)
    potential marker
    potential marker
    NA
    NA
    GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Photoreceptor cells (cluster: 3)
    potential marker
    NA
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Photoreceptor cells (cluster: 5)
    potential marker
    NA
    GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Retinal progenitors (cluster: 4)
    Photoreceptor cells (cluster: 7)
    Retinal progenitors (cluster: 4)
    Photoreceptor cells (cluster: 7)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Non-follicular epithelium (cluster: 3)
    potential marker
    NA
    GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Fibroblasts (cluster: 5)
    potential marker
    NA
    GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
    GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells Tumor (cluster: 1)
    potential marker
    NA
    PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors Melanoma cells (cluster: 1)
    potential marker
    NA
    PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases Melanoma cells (cluster: 3)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Chondrocytes (cluster: 3)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- Chondrocytes (cluster: 2)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/-
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Macrophages (cluster: 10)
    potential marker
    NA
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos