Fish Single-cell RNA Database

CELL TYPE: Hindbrain

Distribution of Hindbrain in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045836	mapk11	4: 5506946 ~ 5522437 (+)
ENSDARG00000006409	mapk12b	4: 5523690 ~ 5530441 (+)
ENSDARG00000004713	mad2l1	7: 57629370 ~ 57637779 (-)
ENSDARG00000016363	her8a	7: 26429941 ~ 26436480 (-)
ENSDARG00000101637	ccnd1	7: 54668303 ~ 54679595 (-)
ENSDARG00000036036	mdka	7: 39166460 ~ 39178198 (+)
ENSDARG00000103316	si:ch211-212k18.5	7: 19552381 ~ 19558842 (+)
ENSDARG00000034855	ccnb3	7: 22981441 ~ 23006732 (+)
ENSDARG00000058369	mex3b	7: 12061787 ~ 12065668 (-)
ENSDARG00000051923	ccnb1	5: 54711027 ~ 54714789 (-)
ENSDARG00000010770	sox19a	5: 24199180 ~ 24201437 (-)
ENSDARG00000100573	ckap2l	5: 13549603 ~ 13561074 (+)
ENSDARG00000067984	gas1b	5: 32360336 ~ 32363372 (-)
ENSDARG00000012432	fam76b	5: 23585215 ~ 23596339 (-)
ENSDARG00000025301	gfap	3: 31792441 ~ 31804481 (-)
ENSDARG00000038066	kpna2	3: 25369965 ~ 25377163 (-)
ENSDARG00000054578	arl6ip1	3: 31104891 ~ 31115996 (-)
ENSDARG00000060115	lrrn1	6: 43076516 ~ 43092175 (-)
ENSDARG00000012485	aurka	6: 60125033 ~ 60139655 (+)
ENSDARG00000100446	si:ch211-286o17.1	6: 47424266 ~ 47462413 (+)
ENSDARG00000095896	pou3f3b	6: 14949950 ~ 14953352 (+)
ENSDARG00000114670	ube2c	6: 55287823 ~ 55297274 (-)
ENSDARG00000036257	rasal2	2: 35732652 ~ 35851661 (+)
ENSDARG00000010192	pax3a	2: 47370323 ~ 47431205 (-)
ENSDARG00000100741	cdc20	2: 19217586 ~ 19234469 (-)
ENSDARG00000063385	cenpe	1: 260039 ~ 296057 (+)
ENSDARG00000096554	si:dkey-25o16.4	1: 26676758 ~ 26700439 (+)
ENSDARG00000029722	hmgb2a	1: 38169512 ~ 38171787 (-)
ENSDARG00000058471	plk1	1: 9153141 ~ 9161843 (+)
ENSDARG00000042032	pou3f3a	9: 6658594 ~ 6661666 (-)
ENSDARG00000098802	map7d1a	16: 35661331 ~ 35776074 (+)
ENSDARG00000009823	pou3f1	16: 33593116 ~ 33595985 (+)
ENSDARG00000031775	ube2s	16: 13672768 ~ 13680692 (-)
ENSDARG00000070656	si:ch211-69g19.2	16: 12052010 ~ 12060782 (-)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000068213	fzd10	8: 44295983 ~ 44298964 (-)
ENSDARG00000010710	msi1	8: 39607466 ~ 39647216 (+)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000013575	rfx2	8: 20072987 ~ 20138251 (-)
ENSDARG00000031044	lipg	8: 32376936 ~ 32386042 (-)
ENSDARG00000098591	tubb2b	8: 52713232 ~ 52715911 (-)
ENSDARG00000042708	tuba8l	8: 28345352 ~ 28349859 (-)
ENSDARG00000055133	cenpf	17: 32720413 ~ 32743249 (-)
ENSDARG00000087554	cdk1	17: 20923691 ~ 20929461 (+)
ENSDARG00000010948	kif11	17: 19481049 ~ 19497006 (+)
ENSDARG00000070794	greb1	17: 30369107 ~ 30418016 (+)
ENSDARG00000001313	g2e3	17: 28798725 ~ 28811747 (-)
ENSDARG00000002344	tubb4b	14: 5861435 ~ 5865146 (+)
ENSDARG00000103732	plp1a	14: 14577246 ~ 14596699 (+)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000021794	hmmr	14: 28545198 ~ 28562971 (+)
ENSDARG00000007960	hnrnpaba	14: 6962271 ~ 6968589 (+)
ENSDARG00000037640	aurkb	14: 240487 ~ 246342 (-)
ENSDARG00000011094	ccna2	14: 46354648 ~ 46374870 (-)
ENSDARG00000005454	tacc3	13: 35880573 ~ 35892305 (-)
ENSDARG00000002403	nusap1	13: 33251721 ~ 33256667 (-)
ENSDARG00000004782	fgfr3	13: 13213567 ~ 13294872 (-)
ENSDARG00000040926	nr2f2	18: 23868650 ~ 24023013 (-)
ENSDARG00000073944	si:ch73-386h18.1	18: 6039141 ~ 6083792 (+)
ENSDARG00000014943	kif23	18: 20435821 ~ 20458840 (-)
ENSDARG00000105687	CABZ01070258.1	18: 49282063 ~ 49359785 (+)
ENSDARG00000075621	birc5a	12: 34429702 ~ 34435604 (-)
ENSDARG00000102624	kif22	12: 5048044 ~ 5071836 (+)
ENSDARG00000024488	top2a	12: 10706772 ~ 10740236 (+)
ENSDARG00000045167	dlgap5	12: 17633354 ~ 17655683 (-)
ENSDARG00000071694	ndc80	12: 10353333 ~ 10365969 (-)
ENSDARG00000091150	mki67	12: 10366617 ~ 10381282 (-)
ENSDARG00000001558	kifc1	19: 6990970 ~ 7000603 (+)
ENSDARG00000056594	irx1b	19: 28127654 ~ 28130658 (-)
ENSDARG00000035715	marcksl1b	19: 29798064 ~ 29800812 (+)
ENSDARG00000043137	cdca8	19: 47771659 ~ 47782916 (-)
ENSDARG00000017673	nova2	15: 28685625 ~ 28766824 (+)
ENSDARG00000078748	si:ch211-137a8.4	15: 29085955 ~ 29091807 (+)
ENSDARG00000074526	zbtb16b	15: 18253542 ~ 18361475 (-)
ENSDARG00000102483	numa1	15: 44021044 ~ 44052927 (-)
ENSDARG00000032963	her12	23: 21444922 ~ 21446985 (-)
ENSDARG00000078654	tpx2	23: 32028574 ~ 32039790 (+)
ENSDARG00000094977	si:ch211-156j22.4	23: 27575539 ~ 27589829 (-)
ENSDARG00000007184	zbtb16a	21: 23159385 ~ 23331619 (-)
ENSDARG00000075542	zfhx4	24: 23241444 ~ 23323526 (-)
ENSDARG00000074335	boc	24: 21206243 ~ 21258945 (-)
ENSDARG00000103754	aspm	22: 23546926 ~ 23582605 (+)
ENSDARG00000039880	arpp19b	25: 7653902 ~ 7663608 (-)
ENSDARG00000020708	mdkb	25: 7872135 ~ 7880878 (+)
ENSDARG00000100918	prc1a	25: 7435291 ~ 7461466 (+)
--	acrc	--
--	cdc14b.1	--
--	id1.1	--
--	incenp	--
--	meis2b	--
--	setd8b	--
--	si:ch211-193l2.4	--
--	si:ch211-193l2.7	--
--	si:ch211-208h1.1	--
--	whsc1	--
--	zgc:165461	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Hindbrain.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE158142 (16hpf)	Danio rerio	head	2	Hindbrain	baseline	16hpf, 14 somites, untreatment	ENSDARG00000025301 (gfap)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Hindbrain

Distribution of Hindbrain in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences