Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
her12 | 23: 21444922 ~ 21446985 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Progenitors (cluster: 3) |
marker |
DOI:10.1016/j.neuron.2020.09.023 |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Progenitors (cluster: 3) |
marker |
DOI:10.1016/j.neuron.2020.09.023 |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Progenitors (cluster: 11) Progenitors (cluster: 16) Progenitors (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment |
Progenitors (cluster: 4) |
potential marker |
NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Neuron (cluster: 2) |
potential marker |
NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Neuron (cluster: 5) |
potential marker |
NA |
|
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Neuron (cluster: 2) |
potential marker |
NA |
|
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo |
Somites (cluster: 3) |
potential marker |
NA |
|
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |
Tailbud (cluster: 6) |
potential marker |
NA |
|
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells |
PMN progenitors (cluster: 1) |
potential marker |
NA |
|
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells |
PMN progenitors (cluster: 2) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Neuron (cluster: 3) |
potential marker |
NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Neuroblast (cluster: 2) Neuroblast (cluster: 3) |
potential marker potential marker |
NA NA |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Neuroblast (cluster: 1) Neuroblast (cluster: 10) Neuron (cluster: 4) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Hindbrain rhombomere (cluster: 1) |
potential marker |
NA |
|
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment |
Mid,hind progenitors (neural plate) (cluster: 1) |
potential marker |
NA |
|
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Hindbrain rhombomere (cluster: 1) Hindbrain (cluster: 2) |
potential marker potential marker |
NA NA |
|
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Cycling progenitors (cluster: 1) Cycling progenitors (cluster: 2) |
potential marker potential marker |
NA NA |
|
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment |
Progenitors (cluster: 1) |
potential marker |
NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | ||||
GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 |
Prop1+ group (cluster: 9) |
potential marker |
NA |
|
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis |
Prop1+ group (cluster: 11) |
potential marker |
NA |
|
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Retinal progenitors (cluster: 1) |
potential marker |
NA |
|
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment |
Retinal progenitors (cluster: 1) Retinal progenitors (cluster: 3) |
potential marker potential marker |
NA NA |
|
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment |
Retinal progenitors (cluster: 1) Muller glia cells (cluster: 9) |
potential marker potential marker |
NA NA |
|
GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment |
Retinal progenitors (cluster: 3) |
potential marker |
NA |
|
GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment |
Retinal progenitors (cluster: 3) Retinal progenitors (cluster: 6) Retinal progenitors (cluster: 3) Retinal progenitors (cluster: 6) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. | ||||
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA734348 (shield, control) | embryo | baseline | 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) | ||||
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (20hpf) | embryo | baseline | 20hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA734348 (shield, dnmt1) | embryo | growth | 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
PRJNA734348 (dome, control) | embryo | baseline | 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) | ||||
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells | ||||
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (12hpf) | embryo | baseline | 12hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) | ||||
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | ||||
PRJNA734348 (dome, dnmt1) | embryo | growth | 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
PRJNA706197 (1.25dpf) | embryo | baseline | 1.25dpf, FACS sorted sox10:nEOS cells | ||||
PRJNA706197 (14hpf) | embryo | baseline | 14hpf, FACS sorted sox10:nEOS cells | ||||
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | ||||
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury | ||||
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury | ||||
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment | ||||
GSE150498 (nod2-|-, untreated) | intestine | disease | 6dpf, nod2-/-, untreated | ||||
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS | ||||
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS | ||||
GSE150498 (wildtype, untreated) | intestine | baseline | 6dpf, wildtype, untreated | ||||
GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae | ||||
GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | ||||
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae | ||||
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours | ||||
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS | ||||
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days | ||||
PRJNA672101 (WT) | retina | baseline | 5mpf, three retinas from WT zebrafsih | ||||
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih | ||||
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment | ||||
GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells | ||||
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
PRJNA641144 (C_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro co-culture | ||||
PRJNA641144 (D_INV) | tumor | disease | adult, ZMEL1-INV cells in vitro individual culture | ||||
PRJNA641144 (P_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo primary tumors | ||||
PRJNA641144 (D_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro individual culture | ||||
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases | ||||
PRJNA641144 (C_INV) | tumor | disease | adult, ZMEL1-INV cells in vitro co-culture | ||||
PRJNA641144 (M_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vivo metastases | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- | ||||
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells | ||||
GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |