Fish Single-cell RNA Database

GENE ID: ENSDARG00000016951

Symbol	Location	Gene type	Genome version	Species
neurog3	13: 25761279 ~ 25762391 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000016951 (neurog3), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000021336	pax4	4: 19700308 ~ 19704628 (+)
ENSDARG00000069335	bcl6b	7: 20017211 ~ 20028167 (+)
ENSDARG00000035984	mnx1	7: 40638210 ~ 40641006 (+)
ENSDARG00000004023	isl1	5: 40728613 ~ 40734045 (-)
ENSDARG00000044155	mafaa	6: 32699359 ~ 32703317 (-)
ENSDARG00000014190	sst2	2: 5726353 ~ 5728843 (-)
ENSDARG00000056196	slc2a2	2: 25816843 ~ 25837986 (+)
ENSDARG00000091609	spink4	1: 12135129 ~ 12138612 (+)
ENSDARG00000025495	nhlh2	9: 32978302 ~ 32981660 (+)
ENSDARG00000045131	id4	16: 9977858 ~ 9980402 (-)
ENSDARG00000040253	onecutl	16: 29521736 ~ 29528198 (-)
ENSDARG00000041702	rfx6	20: 42506612 ~ 42534504 (-)
ENSDARG00000008829	chga	20: 27020201 ~ 27045991 (+)
ENSDARG00000020354	lmx1a	20: 33922339 ~ 33940260 (+)
ENSDARG00000053301	insm1b	17: 41463942 ~ 41466145 (+)
ENSDARG00000053298	nkx2.2a	17: 42208623 ~ 42218652 (-)
ENSDARG00000016951	neurog3	13: 25761279 ~ 25762391 (+)
ENSDARG00000104735	nkx6.2	13: 51579851 ~ 51584264 (+)
ENSDARG00000007982	onecut1	18: 38755023 ~ 38760271 (+)
ENSDARG00000040799	sst1.1	15: 36156986 ~ 36158851 (+)
ENSDARG00000032963	her12	23: 21444922 ~ 21446985 (-)
ENSDARG00000022569	nkx6.1	21: 19070921 ~ 19073831 (+)
ENSDARG00000101523	arxb	21: 40670996 ~ 40676224 (-)
ENSDARG00000054562	her15.1	11: 41981959 ~ 41984487 (+)
ENSDARG00000058011	arxa	24: 23936829 ~ 23942722 (-)
ENSDARG00000002779	pdx1	24: 21684189 ~ 21686706 (+)
ENSDARG00000079296	gcga	22: 11617520 ~ 11626018 (-)
ENSDARG00000103379	pax6a	25: 15029041 ~ 15049781 (-)

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	NA	NA	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	NA	NA	NA
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	NA	NA	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	NA	NA	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	NA	NA	NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	NA	NA	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	NA	NA	NA
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated	NA	NA	NA
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	NA	NA	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	NA	NA	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	NA	NA	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	NA	NA	NA
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	NA	NA	NA
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells	NA	NA	NA
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors	NA	NA	NA
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases	NA	NA	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	NA	NA	NA
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	NA	NA	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	NA	NA	NA

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000016951

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences