Fish Single-cell RNA Database

CELL TYPE: Iridophore

Distribution of Iridophore in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000030694	atp6v1e1b	4: 5240126 ~ 5247335 (-)
ENSDARG00000006215	akr1b1.1	4: 14899720 ~ 14910386 (+)
ENSDARG00000002131	celf2	4: 23886726 ~ 24031924 (-)
ENSDARG00000019644	ldhba	4: 16828752 ~ 16836006 (-)
ENSDARG00000053709	si:ch73-89b15.3	4: 2267641 ~ 2290268 (+)
ENSDARG00000053136	b2m	4: 12785964 ~ 12795489 (-)
ENSDARG00000011961	csrp2	4: 2511629 ~ 2525934 (-)
ENSDARG00000045749	ppfibp1a	4: 10811490 ~ 10835620 (-)
ENSDARG00000029524	impdh1b	4: 18960914 ~ 18985481 (+)
ENSDARG00000101908	rab3ip	4: 72723304 ~ 72789220 (+)
ENSDARG00000098745	tfec	4: 6032640 ~ 6047236 (+)
ENSDARG00000104011	rps17	7: 54092291 ~ 54098631 (-)
ENSDARG00000090444	ponzr1	7: 20344032 ~ 20369869 (+)
ENSDARG00000017474	zgc:110699	7: 38811800 ~ 38822387 (+)
ENSDARG00000069432	plscr3b	7: 26580501 ~ 26603743 (-)
ENSDARG00000036427	slc3a2a	7: 20524064 ~ 20530447 (+)
ENSDARG00000088332	alx4a	7: 26893688 ~ 26924903 (-)
ENSDARG00000021442	cdh11	7: 43760149 ~ 43857938 (-)
ENSDARG00000036298	rps13	7: 27041315 ~ 27044013 (+)
ENSDARG00000102051	mtbl	7: 29148714 ~ 29149228 (+)
ENSDARG00000077769	cited1	7: 51642671 ~ 51648749 (-)
ENSDARG00000011201	rplp2l	7: 12959846 ~ 12968701 (-)
ENSDARG00000056233	zgc:110591	7: 19909774 ~ 19923249 (-)
ENSDARG00000078882	slc22a31	7: 56453646 ~ 56469115 (+)
ENSDARG00000098153	lhfpl2b	5: 51739181 ~ 51756210 (-)
ENSDARG00000019230	rpl7a	5: 33284144 ~ 33287691 (-)
ENSDARG00000057706	si:ch211-137i24.10	5: 24165141 ~ 24174956 (-)
ENSDARG00000004392	hdr	5: 27404946 ~ 27415081 (+)
ENSDARG00000098646	mthfd2	5: 69716458 ~ 69732754 (+)
ENSDARG00000006691	rpl12	5: 32882688 ~ 32887020 (+)
ENSDARG00000099746	rgs3a	5: 70155935 ~ 70183242 (+)
ENSDARG00000038095	socs1a	3: 26813058 ~ 26814953 (+)
ENSDARG00000088390	nme4	3: 15068321 ~ 15082475 (-)
ENSDARG00000055172	si:ch211-256m1.8	3: 25154078 ~ 25165189 (+)
ENSDARG00000011925	spns1	3: 15455319 ~ 15475080 (-)
ENSDARG00000077467	sox10	3: 1492174 ~ 1501255 (+)
ENSDARG00000017049	adsl	3: 24207243 ~ 24218622 (+)
ENSDARG00000099312	jpt1b	3: 6380160 ~ 6417328 (-)
ENSDARG00000099371	cygb1	3: 6639796 ~ 6669640 (+)
ENSDARG00000052816	shmt1	3: 40260929 ~ 40276071 (-)
ENSDARG00000054942	lgals2a	3: 28953274 ~ 28961518 (+)
ENSDARG00000059680	fscn1a	3: 40576447 ~ 40589489 (+)
ENSDARG00000094695	si:dkey-204f11.64	3: 34140507 ~ 34147100 (+)
ENSDARG00000018698	carm1	3: 34149337 ~ 34172214 (+)
ENSDARG00000070822	cnp	3: 17933132 ~ 17946949 (+)
ENSDARG00000102827	ubfd1	3: 43942032 ~ 43959873 (-)
ENSDARG00000010160	rps15a	3: 26345732 ~ 26351656 (+)
ENSDARG00000013307	rpl19	3: 16229911 ~ 16232442 (+)
ENSDARG00000053457	rpl23	3: 33423986 ~ 33427803 (-)
ENSDARG00000010727	ttyh2l	3: 51563695 ~ 51657722 (+)
ENSDARG00000005679	trip10a	3: 54431093 ~ 54500354 (-)
ENSDARG00000101914	metrnla	3: 48473346 ~ 48489887 (+)
ENSDARG00000104495	pltp	6: 55357188 ~ 55393309 (+)
ENSDARG00000003991	fhl2b	6: 15071399 ~ 15101477 (-)
ENSDARG00000006915	arl8ba	6: 42951960 ~ 42971184 (-)
ENSDARG00000070991	mlpha	6: 15604759 ~ 15641686 (-)
ENSDARG00000007231	ryk	6: 27514465 ~ 27615701 (+)
ENSDARG00000058699	tmeff2b	6: 8756177 ~ 8865543 (-)
ENSDARG00000021032	foxd3	6: 32092032 ~ 32093830 (-)
ENSDARG00000058348	scinlb	2: 10396579 ~ 10450784 (-)
ENSDARG00000038754	plk3	2: 35603637 ~ 35611789 (+)
ENSDARG00000060345	apoda.1	2: 37207799 ~ 37210397 (-)
ENSDARG00000010956	sh3glb1b	2: 16173999 ~ 16210623 (+)
ENSDARG00000076959	si:ch211-38m6.6	2: 7847480 ~ 7874384 (+)
ENSDARG00000031548	ephb3a	2: 7923964 ~ 8017579 (-)
ENSDARG00000023713	aqp1a.1	2: 2737422 ~ 2749333 (+)
ENSDARG00000114516	CABZ01021592.1	2: 7663942 ~ 7666021 (-)
ENSDARG00000016706	atic	1: 5437390 ~ 5504130 (+)
ENSDARG00000099104	rpl24	1: 6408 ~ 12027 (-)
ENSDARG00000027199	smad1	1: 35896488 ~ 35929143 (-)
ENSDARG00000016835	tcirg1a	1: 44870880 ~ 44901163 (-)
ENSDARG00000025350	prdx2	1: 51721851 ~ 51729862 (+)
ENSDARG00000008413	atp11a	1: 46263473 ~ 46401385 (-)
ENSDARG00000099729	pcdh10a	1: 12763461 ~ 12797410 (+)
ENSDARG00000069946	itga6b	1: 31019165 ~ 31064706 (+)
ENSDARG00000018178	pgm2	1: 18779168 ~ 18803919 (-)
ENSDARG00000029722	hmgb2a	1: 38169512 ~ 38171787 (-)
ENSDARG00000092693	tpt1	1: 34707932 ~ 34713868 (-)
ENSDARG00000092240	si:ch211-243a20.3	1: 45351890 ~ 45366422 (+)
ENSDARG00000053269	slc2a15b	1: 31573225 ~ 31598417 (+)
ENSDARG00000070266	spock3	1: 20635190 ~ 20706296 (+)
ENSDARG00000001873	phgdh	9: 48185936 ~ 48214216 (-)
ENSDARG00000007396	rnd3b	9: 23026324 ~ 23033818 (-)
ENSDARG00000042018	fhl2a	9: 6578580 ~ 6601988 (+)
ENSDARG00000042124	si:dkey-4e7.3	9: 7072504 ~ 7081557 (+)
ENSDARG00000034572	gpr143	9: 55056310 ~ 55090829 (+)
ENSDARG00000040039	pttg1ipb	9: 12655278 ~ 12659140 (-)
ENSDARG00000101009	cited4b	16: 35535171 ~ 35537491 (+)
ENSDARG00000029533	rpl18	16: 16969086 ~ 16991808 (+)
ENSDARG00000010032	cmtm7	16: 41495670 ~ 41503925 (-)
ENSDARG00000099014	fxyd1	16: 45202602 ~ 45225520 (-)
ENSDARG00000089441	si:ch211-105c13.3	16: 22695211 ~ 22713192 (-)
ENSDARG00000076541	clec3ba	16: 2840775 ~ 2844195 (+)
ENSDARG00000073978	crabp2a	16: 14383479 ~ 14397003 (-)
ENSDARG00000034643	fhl3a	16: 33655890 ~ 33736831 (+)
ENSDARG00000055115	dtnbp1a	16: 25504109 ~ 25535430 (-)
ENSDARG00000030602	rps19	16: 24188114 ~ 24195361 (-)
ENSDARG00000099631	cmtm6	16: 41467188 ~ 41488023 (-)
ENSDARG00000097057	fxyd6l	16: 24601140 ~ 24642815 (-)
ENSDARG00000033539	paics	20: 25618114 ~ 25631256 (-)
ENSDARG00000019253	rhag	20: 14014813 ~ 14054083 (-)
ENSDARG00000031100	ivns1abpa	20: 34320635 ~ 34341183 (+)
ENSDARG00000019383	cdc42bpb	20: 18391860 ~ 18536474 (-)
ENSDARG00000029544	id2b	20: 29784927 ~ 29787210 (-)
ENSDARG00000042557	rnf144ab	20: 29836276 ~ 29864530 (-)
ENSDARG00000099351	igfbp1a	20: 6808774 ~ 6812688 (-)
ENSDARG00000006837	mycn	20: 33294428 ~ 33299384 (+)
ENSDARG00000042566	rps7	20: 30372352 ~ 30377221 (-)
ENSDARG00000029036	rab32a	20: 32009271 ~ 32045182 (-)
ENSDARG00000055678	akap12b	20: 26407758 ~ 26467454 (-)
ENSDARG00000029150	hsp90ab1	20: 51197758 ~ 51213829 (+)
ENSDARG00000042876	abracl	20: 36806398 ~ 36818195 (+)
ENSDARG00000042548	tpd52l1	20: 39691793 ~ 39735987 (-)
ENSDARG00000041799	cx43	20: 40715163 ~ 40720530 (-)
ENSDARG00000099022	faua	20: 54201459 ~ 54208344 (-)
ENSDARG00000043631	bcas2	8: 11008763 ~ 11016766 (-)
ENSDARG00000102612	slc15a4	8: 35809081 ~ 35960987 (-)
ENSDARG00000000690	sypl2b	8: 25079470 ~ 25090458 (+)
ENSDARG00000006508	pip5k1bb	8: 11234168 ~ 11324143 (-)
ENSDARG00000024540	tspan36	8: 29726620 ~ 29734951 (+)
ENSDARG00000076566	kank3	8: 47758621 ~ 47823318 (-)
ENSDARG00000009212	ppiaa	8: 45754871 ~ 45760087 (-)
ENSDARG00000017569	reep3a	17: 19607387 ~ 19626357 (-)
ENSDARG00000023318	fmn2a	17: 19753559 ~ 19828505 (-)
ENSDARG00000091813	si:dkey-21a6.5	17: 43519290 ~ 43533095 (-)
ENSDARG00000091792	akap12a	17: 7763630 ~ 7783588 (+)
ENSDARG00000071697	zgc:66433	14: 20918701 ~ 21001756 (+)
ENSDARG00000087693	atox1	14: 25982962 ~ 25985762 (-)
ENSDARG00000088439	gm2a	14: 26224541 ~ 26227970 (+)
ENSDARG00000039429	adka	13: 24918096 ~ 25199260 (-)
ENSDARG00000039150	lgmn	13: 36037970 ~ 36050327 (-)
ENSDARG00000036282	rnaset2	13: 7049210 ~ 7065999 (+)
ENSDARG00000101289	slc29a1a	13: 46830736 ~ 46917098 (-)
ENSDARG00000042214	tmem243a	18: 8912113 ~ 8916000 (+)
ENSDARG00000041691	bhlhe41	18: 16125852 ~ 16130165 (+)
ENSDARG00000100719	uraha	18: 31016379 ~ 31023447 (+)
ENSDARG00000052497	zgc:110789	18: 12034985 ~ 12052132 (-)
ENSDARG00000062558	rspry1	18: 17725410 ~ 17751843 (+)
ENSDARG00000074442	alx4b	18: 38321039 ~ 38364462 (+)
ENSDARG00000079848	gmps	18: 34181655 ~ 34216886 (+)
ENSDARG00000088030	rpl35a	18: 45781115 ~ 45791224 (+)
ENSDARG00000021488	cyth1b	12: 34051434 ~ 34192955 (+)
ENSDARG00000026611	socs3b	12: 34258139 ~ 34277465 (+)
ENSDARG00000075621	birc5a	12: 34429702 ~ 34435604 (-)
ENSDARG00000099101	gch2	12: 25085751 ~ 25092570 (+)
ENSDARG00000019274	rasd1	12: 1398404 ~ 1400009 (+)
ENSDARG00000007597	bloc1s4	19: 25679538 ~ 25693728 (-)
ENSDARG00000006859	nkain1	19: 43017628 ~ 43035187 (+)
ENSDARG00000023298	rps27.1	19: 8743260 ~ 8748571 (-)
ENSDARG00000077664	zgc:110239	19: 42490936 ~ 42503143 (-)
ENSDARG00000087647	sept7a	19: 11331822 ~ 11425592 (-)
ENSDARG00000070702	s100v2	19: 24262263 ~ 24267823 (-)
ENSDARG00000023989	pef1	19: 37120491 ~ 37134211 (+)
ENSDARG00000035871	rpl30	19: 32855139 ~ 32860780 (+)
ENSDARG00000062688	gpnmb	19: 20247435 ~ 20270207 (-)
ENSDARG00000008861	tfap2e	19: 47429722 ~ 47456787 (-)
ENSDARG00000043509	rpl11	19: 43780970 ~ 43786940 (+)
ENSDARG00000075436	sytl2b	15: 19697246 ~ 19724932 (-)
ENSDARG00000077396	tlcd2	15: 25398127 ~ 25435085 (-)
ENSDARG00000043453	rps5	15: 39964943 ~ 39971756 (-)
ENSDARG00000097804	lypc	15: 39957809 ~ 39963009 (-)
ENSDARG00000039007	eno3	23: 44611864 ~ 44625579 (+)
ENSDARG00000090634	smim29	23: 3721041 ~ 3744838 (+)
ENSDARG00000028335	hmga1a	23: 3751451 ~ 3759692 (-)
ENSDARG00000018968	acvr1ba	23: 27800519 ~ 27822920 (-)
ENSDARG00000036875	rps12	23: 31431956 ~ 31435922 (+)
ENSDARG00000045367	tuba1b	23: 35713557 ~ 35716519 (+)
ENSDARG00000013838	sulf2b	23: 15203822 ~ 15330230 (-)
ENSDARG00000056515	spsb1	23: 22496314 ~ 22523303 (-)
ENSDARG00000101461	emp3b	23: 18779043 ~ 18794561 (+)
ENSDARG00000012513	sdcbp2	23: 16648621 ~ 16682186 (-)
ENSDARG00000092856	si:ch211-210c8.7	23: 33731192 ~ 33738945 (-)
ENSDARG00000029905	phyhd1	21: 4508959 ~ 4525080 (+)
ENSDARG00000062003	myo5b	21: 22446240 ~ 22547496 (-)
ENSDARG00000073961	si:ch211-160j14.2	21: 32052080 ~ 32060993 (-)
ENSDARG00000006316	rpl23a	21: 26071874 ~ 26074640 (+)
ENSDARG00000002593	slc45a2	21: 19445942 ~ 19484289 (+)
ENSDARG00000069521	vps29	21: 17005737 ~ 17011574 (+)
ENSDARG00000075161	defbl1	21: 21741804 ~ 21742991 (+)
ENSDARG00000009653	lhfpl2a	21: 300647 ~ 308852 (-)
ENSDARG00000018334	rpl35	21: 5873227 ~ 5881344 (-)
ENSDARG00000102482	zgc:165573	21: 32021272 ~ 32036597 (-)
ENSDARG00000075629	si:dkey-197i20.6	11: 7350926 ~ 7355995 (-)
ENSDARG00000057575	pnp4a	11: 24251141 ~ 24299538 (+)
ENSDARG00000077082	agtrap	11: 16040517 ~ 16064291 (+)
ENSDARG00000070360	inka1a	11: 35048642 ~ 35056607 (+)
ENSDARG00000021838	rps23	11: 42556395 ~ 42561215 (+)
ENSDARG00000004060	bhlhe40	11: 35759652 ~ 35763323 (-)
ENSDARG00000070597	prelp	11: 21076872 ~ 21086254 (+)
ENSDARG00000029402	sort1a	11: 36280523 ~ 36341189 (-)
ENSDARG00000056995	snai1a	11: 25251495 ~ 25257595 (-)
ENSDARG00000075343	csf1a	11: 23265157 ~ 23297192 (+)
ENSDARG00000091298	pmela	11: 3254252 ~ 3272020 (+)
ENSDARG00000056028	slc22a7a	11: 30729745 ~ 30742966 (+)
ENSDARG00000103608	zgc:153431	11: 43751263 ~ 43787153 (+)
ENSDARG00000106631	tmem63bb	11: 43470176 ~ 43473824 (-)
ENSDARG00000026531	alcama	10: 28731749 ~ 28835812 (-)
ENSDARG00000041811	rps25	10: 39125637 ~ 39130935 (-)
ENSDARG00000043848	sod1	10: 25694395 ~ 25699454 (-)
ENSDARG00000075853	sh3kbp1	24: 25794318 ~ 25903017 (+)
ENSDARG00000045352	cst14a.2	24: 20920563 ~ 20921714 (+)
ENSDARG00000045248	h3f3d	24: 37688729 ~ 37693028 (+)
ENSDARG00000075542	zfhx4	24: 23241444 ~ 23323526 (-)
ENSDARG00000113438	CR318624.2	24: 9003998 ~ 9016244 (+)
ENSDARG00000041839	tsc22d2	22: 35205017 ~ 35263902 (+)
ENSDARG00000014171	bloc1s1	22: 10123729 ~ 10127944 (-)
ENSDARG00000054818	rpl32	22: 31039091 ~ 31044066 (+)
ENSDARG00000103522	si:zfos-943e10.1	22: 3262413 ~ 3299355 (-)
ENSDARG00000061757	rabgap1l	22: 17312111 ~ 17454457 (+)
ENSDARG00000024276	pcbp4	22: 32289567 ~ 32507966 (-)
ENSDARG00000046030	zgc:110339	25: 10547228 ~ 10553685 (+)
ENSDARG00000070917	kitlga	25: 18118906 ~ 18140537 (-)
ENSDARG00000071031	snx1a	25: 6016642 ~ 6049339 (-)
ENSDARG00000039882	ap3s2	25: 10762016 ~ 10803532 (+)
ENSDARG00000003216	anxa2a	25: 34013093 ~ 34027440 (+)
ENSDARG00000042874	phlda2	25: 23524796 ~ 23526086 (-)
ENSDARG00000097208	NA	25: 30298377 ~ 30299662 (+)
ENSDARG00000103476	trpm1b	25: 34576067 ~ 34615463 (+)
ENSDARG00000100562	CABZ01080702.1	KN149710.1: 3782 ~ 29401 (+)
ENSDARG00000099154	CABZ01032488.1	KN149764.1: 4168 ~ 17479 (-)
--	abhd10b	--
--	fam129bb	--
--	rab7	--
--	sox4a.1	--
--	zgc:101840	--
--	zgc:63831	--
--	unm-sa821	--
--	zgc:171772	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Iridophore.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA564810 (5dpf)	Danio rerio	embryo	18	Iridophore	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000060345 (apoda.1)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	18	Iridophore	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000075629 (si:dkey-197i20.6)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	18	Iridophore	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000062688 (gpnmb)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	18	Iridophore	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000055172 (si:ch211-256m1.8)	marker	DOI:10.1093/g3journal/jkac062
PRJNA564810 (5dpf)	Danio rerio	embryo	18	Iridophore	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000091792 (akap12a)	marker	DOI:10.1093/g3journal/jkac062
GSE131136 (all)	Danio rerio	trunk, skin	9	Iridophore	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	ENSDARG00000062688 (gpnmb)	marker	DOI:10.7554/eLife.45181
GSE131136 (all)	Danio rerio	trunk, skin	9	Iridophore	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	ENSDARG00000098745 (tfec)	marker	DOI:10.7554/eLife.45181
GSE131136 (all)	Danio rerio	trunk, skin	9	Iridophore	baseline	5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone	ENSDARG00000075343 (csf1a)	marker	DOI:10.7554/eLife.45181

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Iridophore

Distribution of Iridophore in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences