GENE ID: --


Symbol Location Gene type Genome version Species
sox4a.1 -- -- -- Danio rerio

MARKER



EXPRESSION


Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Chondrocytes (cluster: 6)
potential marker
NA
GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells Less-differentiated SHFPs (cluster: 5)
Proliferative SHFPs (cluster: 9)
potential marker
potential marker
NA
NA
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos Ionocyte progenitors (cluster: 3)
potential marker
NA
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Neutrophils (cluster: 8)
potential marker
NA
GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Epidermal cells (cluster: 10)
potential marker
NA
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Neuron (cluster: 1)
potential marker
NA
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Isl1+ group (cluster: 12)
potential marker
NA
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment
GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment Retinal ganglion cells (cluster: 6)
potential marker
NA
GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Amacrine cells (cluster: 2)
potential marker
NA
GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Amacrine cells (cluster: 2)
Amacrine cells (cluster: 2)
potential marker
potential marker
NA
NA
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Schwann cells (cluster: 1)
Pigment progenitors (cluster: 7)
Iridophore (cluster: 9)
potential marker
potential marker
potential marker
NA
NA
NA
GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Multipotent cells (cluster: 3)
potential marker
NA
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Multipotent cells (cluster: 3)
potential marker
NA
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
GSE151354 (wild type) cartilage baseline 21dpf, wild type
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment
GSE158142 (2dpf) head baseline 2dpf, untreatment
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment
GSE158142 (3dpf) head baseline 3dpf, untreatment
GSE158142 (24hpf) head baseline 24hpf, untreatment
GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment
GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC
GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (fgf3 siblings) neuromast regeneration 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory
GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2
GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
GSE163907 (24hpf) trunk baseline 24hpf, trunk tg(sox10:GFP) positive cells
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment
GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 10dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 6dpf, cd41:GFPlow-WT
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -|-) whole body hematopoietic 6dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT

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