Fish Single-cell RNA Database

CELL TYPE: Spinal cord

Distribution of Spinal cord in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000045914	si:ch211-51e12.7	4: 308688 ~ 317971 (+)
ENSDARG00000105037	snrpf	7: 19374683 ~ 19378024 (+)
ENSDARG00000022129	rbm4.3	7: 22792132 ~ 22795637 (+)
ENSDARG00000036036	mdka	7: 39166460 ~ 39178198 (+)
ENSDARG00000006487	anp32a	7: 33345624 ~ 33351532 (-)
ENSDARG00000062326	hmgn7	5: 22969635 ~ 22972775 (+)
ENSDARG00000014817	ranbp1	5: 19006701 ~ 19014589 (-)
ENSDARG00000020482	nono	5: 22590326 ~ 22602979 (-)
ENSDARG00000033009	h3f3c	5: 36944533 ~ 36949476 (-)
ENSDARG00000025301	gfap	3: 31792441 ~ 31804481 (-)
ENSDARG00000052150	pbx4	3: 52999962 ~ 53076469 (+)
ENSDARG00000028119	sumo3a	6: 11070261 ~ 11073880 (-)
ENSDARG00000011125	snrpb	6: 57478337 ~ 57485411 (-)
ENSDARG00000019181	rpsa	6: 7709662 ~ 7720332 (-)
ENSDARG00000021113	ptmaa	6: 29754141 ~ 29795029 (+)
ENSDARG00000101766	ptmab	2: 5131964 ~ 5135125 (-)
ENSDARG00000103672	cirbpa	2: 58841181 ~ 58848884 (+)
ENSDARG00000025350	prdx2	1: 51721851 ~ 51729862 (+)
ENSDARG00000029722	hmgb2a	1: 38169512 ~ 38171787 (-)
ENSDARG00000035993	sumo3b	9: 12648705 ~ 12652984 (-)
ENSDARG00000053291	pnrc2	16: 33101851 ~ 33105677 (-)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000029150	hsp90ab1	20: 51197758 ~ 51213829 (+)
ENSDARG00000031495	seta	8: 2585256 ~ 2591654 (-)
ENSDARG00000009212	ppiaa	8: 45754871 ~ 45760087 (-)
ENSDARG00000098591	tubb2b	8: 52713232 ~ 52715911 (-)
ENSDARG00000008803	marcksb	17: 15534815 ~ 15539701 (+)
ENSDARG00000007697	fabp7a	17: 15433518 ~ 15435887 (+)
ENSDARG00000021124	cfl1	14: 30795559 ~ 30801555 (+)
ENSDARG00000087636	hmgn6	14: 9421510 ~ 9428248 (+)
ENSDARG00000036162	hnrnpa0b	14: 38845674 ~ 38848166 (+)
ENSDARG00000002344	tubb4b	14: 5861435 ~ 5865146 (+)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000057026	ran	14: 21685537 ~ 21693914 (+)
ENSDARG00000007960	hnrnpaba	14: 6962271 ~ 6968589 (+)
ENSDARG00000099859	CR383676.1	14: 45631180 ~ 45631235 (-)
ENSDARG00000052856	khdrbs1a	13: 45009957 ~ 45022527 (-)
ENSDARG00000040503	sb:cb81	18: 49309953 ~ 49318823 (-)
ENSDARG00000040440	snrpd2	18: 40875873 ~ 40884087 (-)
ENSDARG00000106529	dut	18: 5308392 ~ 5318966 (+)
ENSDARG00000070959	si:ch211-288g17.3	19: 9455218 ~ 9460322 (+)
ENSDARG00000023290	fabp3	19: 42955280 ~ 42993306 (+)
ENSDARG00000011648	snrpd1	19: 1872794 ~ 1877746 (+)
ENSDARG00000004169	stmn1a	19: 17205143 ~ 17210928 (-)
ENSDARG00000035715	marcksl1b	19: 29798064 ~ 29800812 (+)
ENSDARG00000103791	nme2b.1	19: 48117388 ~ 48120285 (+)
ENSDARG00000003860	cbx3a	19: 18131512 ~ 18136410 (-)
ENSDARG00000030479	hmgb1b	15: 31513065 ~ 31516583 (-)
ENSDARG00000068434	h3f3b.1	15: 47860045 ~ 47865063 (-)
ENSDARG00000097102	si:ch73-281n10.2	15: 5898410 ~ 5901514 (-)
ENSDARG00000061187	cbx5	23: 36297221 ~ 36306356 (-)
ENSDARG00000093156	si:ch73-21g5.7	23: 21473103 ~ 21474476 (+)
ENSDARG00000028335	hmga1a	23: 3751451 ~ 3759692 (-)
ENSDARG00000036754	hmgn3	23: 31358088 ~ 31372807 (-)
ENSDARG00000001889	tuba1a	23: 35708730 ~ 35711398 (+)
ENSDARG00000005513	naca	23: 17865554 ~ 17876777 (+)
ENSDARG00000053990	hmgb2b	23: 45025909 ~ 45029559 (+)
ENSDARG00000003920	setb	21: 13224239 ~ 13231101 (-)
ENSDARG00000099865	hnrnpabb	21: 3166519 ~ 3175724 (+)
ENSDARG00000040764	id1	11: 18704191 ~ 18705303 (-)
ENSDARG00000033175	snrpe	11: 37720552 ~ 37726201 (+)
ENSDARG00000078473	nucks1a	11: 38540138 ~ 38554394 (-)
ENSDARG00000076120	foxp4	11: 21910343 ~ 22094392 (+)
ENSDARG00000076532	si:ch211-222l21.1	11: 40677616 ~ 40696136 (-)
ENSDARG00000070545	top1l	11: 25296366 ~ 25311677 (+)
ENSDARG00000053446	sub1a	10: 8091144 ~ 8098099 (+)
ENSDARG00000103919	si:ch73-1a9.3	10: 39084354 ~ 39087854 (+)
ENSDARG00000054155	pcna	10: 40821804 ~ 40826657 (-)
ENSDARG00000103994	ppiab	10: 45345574 ~ 45352279 (+)
ENSDARG00000045248	h3f3d	24: 37688729 ~ 37693028 (+)
ENSDARG00000010008	vim	24: 32176155 ~ 32192681 (+)
ENSDARG00000059360	srsf3b	22: 613265 ~ 622967 (-)
ENSDARG00000013351	cirbpb	22: 18542010 ~ 18546649 (-)
ENSDARG00000008049	si:dkey-42i9.4	22: 10540446 ~ 10541712 (-)
ENSDARG00000020708	mdkb	25: 7872135 ~ 7880878 (+)
--	h2afva	--
--	h2afvb	--
--	h3f3b.1.1	--
--	h3f3b.1.2	--
--	hnrnpa0l.1	--
--	zgc:56493	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Spinal cord.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE152982 (wild type)	Danio rerio	trunk	2	Spinal cord	baseline	1.25dpf, untreatment	ENSDARG00000053569 (sox3)	marker	DOI:10.1371/journal.pone.0254024

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Spinal cord

Distribution of Spinal cord in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences