Fish Single-cell RNA Database

GENE ID: ENSDARG00000003344

Symbol	Location	Gene type	Genome version	Species
trpc2b	21: 30746348 ~ 30765533 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000003344 (trpc2b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000036058	gnao1b	7: 29133321 ~ 29144547 (+)
ENSDARG00000061941	trpv4	5: 19795977 ~ 19833310 (-)
ENSDARG00000059883	trpv1	5: 42136359 ~ 42158556 (+)
ENSDARG00000016699	trpa1a	2: 30116486 ~ 30135446 (-)
ENSDARG00000069383	cnga4	9: 32930622 ~ 32946439 (+)
ENSDARG00000117118	taar12e	20: 46060635 ~ 46061650 (-)
ENSDARG00000087419	taar12g	20: 46068598 ~ 46069609 (-)
ENSDARG00000041454	taar12b	20: 46100634 ~ 46101648 (-)
ENSDARG00000086412	taar12c	20: 46104102 ~ 46105119 (-)
ENSDARG00000112794	taar13c	20: 46202188 ~ 46203215 (+)
ENSDARG00000019353	sparc	14: 25937948 ~ 25956860 (-)
ENSDARG00000104430	olfcj1	18: 33009828 ~ 33013057 (+)
ENSDARG00000036232	trpm7	18: 113928 ~ 158541 (-)
ENSDARG00000105218	ompa	18: 3498989 ~ 3502091 (+)
ENSDARG00000116427	olfcg1	18: 32563554 ~ 32567412 (+)
ENSDARG00000041032	or107-1	15: 31344472 ~ 31345885 (+)
ENSDARG00000041030	or111-1	15: 31350122 ~ 31352129 (-)
ENSDARG00000086633	or111-3	15: 31364709 ~ 31366742 (-)
ENSDARG00000041024	or111-6	15: 31389403 ~ 31390985 (-)
ENSDARG00000088453	or111-7	15: 31399923 ~ 31401361 (-)
ENSDARG00000086383	or111-8	15: 31404806 ~ 31406093 (-)
ENSDARG00000079914	stoml3a	15: 3246323 ~ 3252727 (-)
ENSDARG00000077211	or112-1	15: 5360407 ~ 5364508 (+)
ENSDARG00000061560	stim1b	21: 30841241 ~ 30935262 (-)
ENSDARG00000056181	ncam1a	21: 23338059 ~ 23746947 (-)
ENSDARG00000003344	trpc2b	21: 30746348 ~ 30765533 (+)
ENSDARG00000032380	ompb	21: 22188010 ~ 22189719 (-)
ENSDARG00000057035	stoml3b	10: 24641229 ~ 24648231 (-)
ENSDARG00000111859	taar20n	10: 40409832 ~ 40410884 (-)
ENSDARG00000093785	taar17a	10: 40598791 ~ 40599801 (+)
ENSDARG00000016207	zgc:112408	24: 24064562 ~ 24071024 (+)
ENSDARG00000078223	ora4	22: 374478 ~ 378236 (+)
--	mcoln3b	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Microvillus olfactory sensory neuron (cluster: 8)	marker	DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Microvillus olfactory sensory neuron (cluster: 5)	marker	DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Microvillus olfactory sensory neuron (cluster: 3)	marker	DOI:10.1186/1471-2148-8-48, DOI:10.1016/j.bbi.2022.03.006
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
GSE159709 (melanoma)	tumor	disease	adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000003344

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences