Fish Single-cell RNA Database

GENE ID: ENSDARG00000028618

Symbol	Location	Gene type	Genome version	Species
krt18b	6: 39360377 ~ 39365467 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000028618 (krt18b), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000101762	fah	7: 10592152 ~ 10632375 (+)
ENSDARG00000076586	csf2rb	3: 24314697 ~ 24338163 (-)
ENSDARG00000054610	coro1a	3: 30926364 ~ 30941362 (-)
ENSDARG00000027063	arpc1b	3: 40809011 ~ 40820612 (+)
ENSDARG00000028618	krt18b	6: 39360377 ~ 39365467 (+)
ENSDARG00000020929	fam49ba	2: 32215272 ~ 32262287 (-)
ENSDARG00000008388	mmp14b	2: 38161318 ~ 38183641 (+)
ENSDARG00000074776	tmem154	1: 25154076 ~ 25177225 (-)
ENSDARG00000040251	ctsk	16: 29492749 ~ 29502787 (+)
ENSDARG00000074656	ctss2.1	16: 29509133 ~ 29513434 (+)
ENSDARG00000019062	arpc5b	20: 34151670 ~ 34155608 (+)
ENSDARG00000026829	cotl1	18: 13203831 ~ 13216672 (+)
ENSDARG00000008697	epas1a	12: 25775734 ~ 25830268 (+)
ENSDARG00000099672	capgb	12: 22576404 ~ 22607887 (+)
ENSDARG00000078547	si:ch211-264f5.2	19: 5659526 ~ 5669122 (-)
ENSDARG00000017444	hal	25: 7954140 ~ 7974494 (-)
ENSDARG00000003216	anxa2a	25: 34013093 ~ 34027440 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE161712 (M. marinum)	granulomas	disease	adult, infected with bacteria of M. marinum	Epithelialized macrophages (cluster: 3)	marker	DOI:10.1016/j.cell.2021.02.046
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Endothelium (cluster: 15)	potential marker	NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	Microglia (cluster: 4)	potential marker	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type	Perichondrium (cluster: 2) Melanoma cells (cluster: 9)	potential marker potential marker	NA NA
GSE151354 (nkx3.2 mutant)	cartilage	growth	21dpf, nkx3.2 mutant	Perichondrium (cluster: 3) Melanoma cells (cluster: 6)	potential marker potential marker	NA NA
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Epidermal cells (cluster: 9)	potential marker	NA
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Myeloid cells (cluster: 7)	potential marker	NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Osteoblast (cluster: 1) Osteoblast (cluster: 3)	potential marker potential marker	NA NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	Macrophages (cluster: 7)	potential marker	NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	Endothelium (cluster: 3) Macrophages (cluster: 8)	potential marker potential marker	NA NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Endothelium (cluster: 8)	potential marker	NA
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	Endothelium (cluster: 6)	potential marker	NA
PRJNA656271 (2dpf)	embryo	baseline	2dpf, FACS-isolated EGFP+ cells
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells	Pigment cells (cluster: 8)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Cranial neural crest (cluster: 1)	potential marker	NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Somites (cluster: 18) Cranial neural crest (cluster: 19) Xanthophores (cluster: 25) Chondrocytes (cluster: 5) Cranial neural crest (cluster: 6)	potential marker potential marker potential marker potential marker potential marker	NA NA NA NA NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Somites (cluster: 11) Cranial neural crest (cluster: 3)	potential marker potential marker	NA NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	Macrophages (cluster: 6)	potential marker	NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	Macrophages (cluster: 2) Coronary endothelial cells (cluster: 5) Macrophages (cluster: 6)	potential marker potential marker potential marker	NA NA NA
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Macrophages (cluster: 1)	potential marker	NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Fibroblasts (cluster: 3) Macrophages (cluster: 6)	potential marker potential marker	NA NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Macrophages (cluster: 5) Macrophages (cluster: 7)	potential marker potential marker	NA NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Macrophages (cluster: 2) Macrophages (cluster: 5)	potential marker potential marker	NA NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Macrophages (cluster: 2)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Macrophages (cluster: 6)	potential marker	NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	Smooth muscle cells (cluster: 11) Fibroblasts (cluster: 6) Macrophages (cluster: 9)	potential marker potential marker potential marker	NA NA NA
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver	Smooth muscle cells (cluster: 4) Smooth muscle cells (cluster: 6)	potential marker potential marker	NA NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	Microglia (cluster: 11) Macrophages (cluster: 7)	potential marker potential marker	NA NA
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	Support cells (cluster: 7) Support cells (cluster: 8)	potential marker potential marker	NA NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Basal cells (cluster: 2) Neuronal progenitor (cluster: 4)	potential marker potential marker	NA NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Endothelium (cluster: 3) Basal cells (cluster: 4)	potential marker potential marker	NA NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Endothelium (cluster: 4) Basal cells (cluster: 6)	potential marker potential marker	NA NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Smooth muscle cells (cluster: 3)	potential marker	NA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment
PRJNA672101 (nrl-KO)	retina	growth	5mpf, three retinas from nrl-KO zebrafsih	Microglia (cluster: 12)	potential marker	NA
PRJNA672101 (WT)	retina	baseline	5mpf, three retinas from WT zebrafsih	Microglia (cluster: 12)	potential marker	NA
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)	Immune cells (cluster: 9)	potential marker	NA
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)	Immune cells (cluster: 5)	potential marker	NA
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (WT)	whole body	baseline	6dpf, cd41:GFPlow-WT	Macrophages (cluster: 6)	potential marker	NA
GSE158099 (WT)	whole body	baseline	10dpf, cd41:GFPlow-WT	Macrophages (cluster: 7)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	10dpf, cd41:GFPlow-runx1-/-
GSE158099 (WT)	whole body	baseline	16dpf, cd41:GFPlow-WT	Macrophages (cluster: 7)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Macrophages (cluster: 7)	potential marker	NA
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-	Macrophages (cluster: 10)	potential marker	NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+
PRJNA706197 (1.25dpf)	embryo	baseline	1.25dpf, FACS sorted sox10:nEOS cells
PRJNA706197 (14hpf)	embryo	baseline	14hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf)	embryo	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells
PRJNA656271 (24hpf)	embryo	baseline	24hpf, FACS-isolated EGFP+ cells
PRJNA656271 (1.5dpf)	embryo	baseline	1.5dpf, FACS-isolated EGFP+ cells
PRJNA706197 (24hpf)	embryo	baseline	24hpf, FACS sorted sox10:nEOS cells
PRJNA706197 (12hpf)	embryo	baseline	12hpf, FACS sorted sox10:nEOS cells
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE175929 (5mpf)	retina	baseline	5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
PRJNA641144 (C_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro co-culture
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases
PRJNA641144 (P_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo primary tumors
PRJNA641144 (C_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro co-culture
PRJNA641144 (D_INV)	tumor	disease	adult, ZMEL1-INV cells in vitro individual culture
PRJNA641144 (P_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo primary tumors
PRJNA641144 (D_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vitro individual culture
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000028618

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences