GENE ID: ENSDARG00000077069


Symbol Location Gene type Genome version Species
srgn 13: 23070581 ~ 23074454 (-) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION


Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Endothelium (cluster: 15)
potential marker
NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain Microglia (cluster: 4)
Lymphocyte cells (cluster: 6)
potential marker
potential marker
NA
NA
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Microglia (cluster: 13)
potential marker
NA
GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Blood,immune cell (cluster: 11)
potential marker
NA
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Endothelium (cluster: 11)
Myeloid cells (cluster: 6)
Myeloid cells (cluster: 8)
potential marker
potential marker
potential marker
NA
NA
NA
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Macrophages (cluster: 13)
Myeloid cells (cluster: 4)
potential marker
potential marker
NA
NA
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Immune cells (cluster: 4)
potential marker
NA
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+ Immune cells (cluster: 4)
potential marker
NA
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neutrophils (cluster: 5)
potential marker
NA
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neutrophils (cluster: 6)
potential marker
NA
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos Neutrophils (cluster: 6)
potential marker
NA
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Multipotent cells (cluster: 14)
Endothelium (cluster: 21)
Monocytes (cluster: 26)
Leukocytes (cluster: 27)
potential marker
potential marker
potential marker
potential marker
NA
NA
NA
NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Monocytes (cluster: 24)
Endothelium (cluster: 26)
potential marker
potential marker
NA
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Monocytes (cluster: 28)
potential marker
NA
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Epithelialized macrophages (cluster: 12)
Epithelialized macrophages (cluster: 3)
potential marker
potential marker
NA
NA
GSE158142 (24hpf) head baseline 24hpf, untreatment Rostral blood island (myeloid) (cluster: 13)
potential marker
NA
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Neutrophils (cluster: 16)
potential marker
NA
GSE158142 (2dpf) head baseline 2dpf, untreatment Rostral blood island (myeloid) (cluster: 14)
potential marker
NA
GSE158142 (3dpf) head baseline 3dpf, untreatment Neutrophils (cluster: 10)
Rostral blood island (myeloid) (cluster: 15)
potential marker
potential marker
NA
NA
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured Endocardial endothelial cells (cluster: 1)
Coronary endothelial cells (cluster: 7)
potential marker
potential marker
NA
NA
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Endocardial endothelial cells (cluster: 1)
Neutrophils (cluster: 10)
Macrophages (cluster: 6)
potential marker
potential marker
potential marker
NA
NA
NA
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury Endocardial endothelial cells (cluster: 3)
Endocardial endothelial cells (cluster: 5)
potential marker
potential marker
NA
NA
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Endocardial endothelial cells (cluster: 1)
Endocardial endothelial cells (cluster: 4)
potential marker
potential marker
NA
NA
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured Neutrophils (cluster: 9)
potential marker
NA
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Endocardial endothelial cells (cluster: 3)
potential marker
NA
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury Endocardial endothelial cells (cluster: 1)
Endocardial endothelial cells (cluster: 3)
potential marker
potential marker
NA
NA
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Endocardial cells (cluster: 3)
potential marker
NA
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Endothelium (cluster: 11)
Smooth muscle cells (cluster: 4)
Smooth muscle cells (cluster: 6)
potential marker
potential marker
potential marker
NA
NA
NA
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Lymphocyte cells (cluster: 14)
Macrophages (cluster: 7)
Endothelium (cluster: 9)
potential marker
potential marker
potential marker
NA
NA
NA
GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl Endothelium (cluster: 10)
potential marker
NA
GSE150498 (DSS treated) intestine disease 6dpf, DSS treated Endothelium (cluster: 7)
potential marker
NA
GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated Proliferative myeloid + ILC (cluster: 9)
potential marker
NA
GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated Proliferative myeloid + ILC (cluster: 5)
potential marker
NA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Proliferative myeloid + ILC (cluster: 8)
potential marker
NA
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Proliferative myeloid + ILC (cluster: 6)
potential marker
NA
GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS Proliferative myeloid + ILC (cluster: 5)
potential marker
NA
GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA Proliferative myeloid + ILC (cluster: 6)
potential marker
NA
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS Proliferative myeloid + ILC (cluster: 5)
potential marker
NA
GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC Immune cells (cluster: 7)
Immune cells (cluster: 9)
potential marker
potential marker
NA
NA
GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC Immune cells (cluster: 4)
potential marker
NA
GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC Immune cells (cluster: 2)
potential marker
NA
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Lymphocyte cells (cluster: 1)
potential marker
NA
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Lymphocyte cells (cluster: 2)
potential marker
NA
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Lymphocyte cells (cluster: 2)
potential marker
NA
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Prop1+ group (cluster: 9)
potential marker
NA
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Endothelium (cluster: 13)
Pituicytes (cluster: 14)
potential marker
potential marker
NA
NA
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Smooth muscle cells (cluster: 3)
Endothelium (cluster: 6)
potential marker
potential marker
NA
NA
GSE122680 (1.5dpf) retina baseline 1.5dpf, WT, untreatment
PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih Microglia (cluster: 12)
potential marker
NA
PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Immune cells (cluster: 10)
potential marker
NA
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone
GSE159709 (melanoma) tumor disease adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells Macrophages (cluster: 4)
potential marker
NA
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 8)
potential marker
NA
PRJNA641144 (M_INV) tumor disease adult, ZMEL1-INV cells in vivo metastases Melanoma cells (cluster: 7)
Melanoma cells (cluster: 8)
potential marker
potential marker
NA
NA
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Macrophages (cluster: 42)
potential marker
NA
GSE158099 (runx1 -|-) whole body hematopoietic 2.5dpf, cd41:GFPlow-runx1-/- HSPCs (cluster: 5)
potential marker
NA
GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Neutrophils (cluster: 7)
potential marker
NA
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Neutrophils (cluster: 5)
potential marker
NA
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Neutrophils (cluster: 6)
potential marker
NA
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
GSE151354 (wild type) cartilage baseline 21dpf, wild type
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells