DATASET ID: PRJNA559885


Basic information


Tissue / Organ caudal fin
Experiment type regeneration
Sample adult, 2-month old, untreatment
Source dataset ID SRR11886701, SRR11917464
Project ID PRJNA559885
Species Nothobranchius furzeri

Clustering Result


Marker Relationship


Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
1 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
2 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
3 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
4 Pre-osteoblast sp7 (sp7) protein_coding marker DOI:10.1126/science.aaz3090
5 Blastema cells msx1 (msx1) protein_coding marker DOI:10.1242/dev.121.2.347
7 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
8 Macrophages csf1r (csf1r) protein_coding marker DOI:10.1126/science.aaz3090
8 Macrophages marco (marco) protein_coding marker DOI:10.1126/science.aaz3090
9 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
10 Epidermal cells cdh1 (cdh1) protein_coding marker DOI:10.1126/science.aaz3090
11 Blood cells hemgn (hemgn) protein_coding marker DOI:10.1126/science.aaz3090
12 Blood cells hemgn (hemgn) protein_coding marker DOI:10.1126/science.aaz3090
13 Neuron dcx (dcx) protein_coding marker DOI:10.1126/science.aaz3090

Expression



  • The expression of marker genes of each cluster is shown in the figure above.
  • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)