Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
cd63 | 23: 32066168 ~ 32085939 (+) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Radial glia (cluster: 13) Endothelium (cluster: 15) Oligodendrocyte precursor cells (cluster: 21) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain |
Radial glia (cluster: 3) Microglia (cluster: 4) Oligodendrocytes (cluster: 5) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment |
Chondrocytes (cluster: 4) Glia (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Epithelial cells (cluster: 6) Glia (cluster: 8) |
potential marker potential marker |
NA NA |
|
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment |
Glia (cluster: 6) |
potential marker |
NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Myeloid cells (cluster: 6) Myeloid cells (cluster: 8) Epidermal cells (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Myeloid cells (cluster: 4) Myeloid cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Neutrophils (cluster: 5) Macrophages (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Neutrophils (cluster: 6) |
potential marker |
NA |
|
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
Endothelium (cluster: 8) |
potential marker |
NA |
|
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
More-differentiated SHFPs (cluster: 3) Differentiated art.ventricle (cluster: 4) Less-differentiated SHFPs (cluster: 5) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells |
Pre-myelinating oligodendrocyte (cluster: 4) |
potential marker |
NA |
|
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
NCC ionocytes (cluster: 1) NaR ionocytes (cluster: 11) Ionocyte progenitors (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
Pigment cells (cluster: 5) |
potential marker |
NA |
|
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells |
Endothelium (cluster: 3) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Cranial neural crest (cluster: 1) Neuroblast (cluster: 10) Periderm cells (cluster: 4) Chondrocytes (cluster: 6) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Neuroblast (cluster: 2) Chondrocytes (cluster: 5) |
potential marker potential marker |
NA NA |
|
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum |
Inflammatory macrophages (cluster: 10) Epithelialized macrophages (cluster: 12) Epithelialized macrophages (cluster: 3) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Prechordal plate,polsterq (cluster: 14) Mesoderm (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Chondrocytes (cluster: 7) |
potential marker |
NA |
|
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured |
Macrophages (cluster: 6) |
potential marker |
NA |
|
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Fibroblasts (cluster: 3) Coronary endothelial cells (cluster: 5) Macrophages (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury |
Macrophages (cluster: 1) |
potential marker |
NA |
|
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury |
Endocardial endothelial cells (cluster: 1) |
potential marker |
NA |
|
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured | ||||
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury |
Macrophages (cluster: 5) |
potential marker |
NA |
|
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury |
Macrophages (cluster: 2) |
potential marker |
NA |
|
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury | ||||
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood |
Endocardial cells (cluster: 3) Endocardial cells (cluster: 5) |
potential marker potential marker |
NA NA |
|
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment |
Progenitors (cluster: 6) Oligodendrocyte precursor cells (cluster: 8) |
potential marker potential marker |
NA NA |
|
GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC |
Immune cells (cluster: 7) |
potential marker |
NA |
|
GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC |
Immune cells (cluster: 4) |
potential marker |
NA |
|
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Support cells (cluster: 2) |
potential marker |
NA |
|
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Support cells (cluster: 4) |
potential marker |
NA |
|
GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis |
Gonadotrope (cluster: 6) |
potential marker |
NA |
|
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Muller glia cells (cluster: 5) |
potential marker |
NA |
|
GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment |
Muller glia cells (cluster: 10) |
potential marker |
NA |
|
GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | ||||
PRJNA672101 (nrl-KO) | retina | growth | 5mpf, three retinas from nrl-KO zebrafsih |
RPE (cluster: 10) Microglia (cluster: 12) Muller glia cells (cluster: 13) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Macrophages (cluster: 17) |
potential marker |
NA |
|
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
Schwann cells (cluster: 1) Chromaffin cells (cluster: 11) |
potential marker potential marker |
NA NA |
|
PRJNA641144 (M_INV) | tumor | disease | adult, ZMEL1-INV cells in vivo metastases |
Melanoma cells (cluster: 3) |
potential marker |
NA |
|
PRJNA641144 (C_PRO) | tumor | disease | adult, ZMEL1-PRO cells in vitro co-culture |
Melanoma cells (cluster: 1) |
potential marker |
NA |
|
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Epidermal cells (cluster: 7) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 10dpf, cd41:GFPlow-WT |
Neutrophils (cluster: 6) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 10dpf, cd41:GFPlow-runx1-/- |
Neutrophils (cluster: 7) |
potential marker |
NA |
|
GSE158099 (WT) | whole body | baseline | 16dpf, cd41:GFPlow-WT |
Neutrophils (cluster: 5) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Macrophages (cluster: 7) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Multipotent cells (cluster: 3) Neutrophils (cluster: 6) |
potential marker potential marker |
NA NA |
|
GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | ||||
GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant | ||||
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ | ||||
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- | ||||
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry | ||||
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos | ||||
PRJNA734348 (shield, dnmt1) | embryo | growth | 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA734348 (dome, control) | embryo | baseline | 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) | ||||
PRJNA706197 (12hpf) | embryo | baseline | 12hpf, FACS sorted sox10:nEOS cells | ||||
GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) | ||||
PRJNA706197 (1.25dpf) | embryo | baseline | 1.25dpf, FACS sorted sox10:nEOS cells | ||||
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | ||||
PRJNA706197 (14hpf) | embryo | baseline | 14hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA734348 (dome, dnmt1) | embryo | growth | 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | ||||
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | ||||
PRJNA734348 (shield, control) | embryo | baseline | 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) | ||||
PRJNA706197 (20hpf) | embryo | baseline | 20hpf, FACS sorted sox10:nEOS cells | ||||
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development | ||||
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |