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| Symbol | Location | Gene type | Genome version | Species |
|---|---|---|---|---|
| tmsb4x | 9: 54178475 ~ 54180059 (+) | protein_coding | GRCz11 | Danio rerio |
: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain |
Microglia (cluster: 4) |
potential marker |
NA |
|
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Neuron (cluster: 2) |
potential marker |
NA |
|
| PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Endothelium (cluster: 11) Myeloid cells (cluster: 6) Myeloid cells (cluster: 8) Epidermal cells (cluster: 9) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
| PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Endothelium (cluster: 11) Myeloid cells (cluster: 4) Monocytes (cluster: 6) Myeloid cells (cluster: 7) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
| GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Immune cells (cluster: 11) Immune cells (cluster: 4) Epidermal cells (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Immune cells (cluster: 4) Immune cells (cluster: 8) |
potential marker potential marker |
NA NA |
|
| GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry |
Immune cells (cluster: 5) |
potential marker |
NA |
|
| GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Neutrophils (cluster: 5) Macrophages (cluster: 7) |
potential marker potential marker |
NA NA |
|
| GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Neutrophils (cluster: 6) |
potential marker |
NA |
|
| GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) |
Ectoderm cells (cluster: 2) |
potential marker |
NA |
|
| GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo | ||||
| GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |
EVL, Periderm (cluster: 3) |
potential marker |
NA |
|
| GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
Endothelium (cluster: 8) |
potential marker |
NA |
|
| GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
Skin (cluster: 10) Skin (cluster: 2) Ionocyte progenitors (cluster: 3) |
potential marker potential marker potential marker |
NA NA NA |
|
| PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Multipotent cells (cluster: 14) Enteric smooth muscle (cluster: 15) Epidermal cells (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
| PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 16) Monocytes (cluster: 24) |
potential marker potential marker |
NA NA |
|
| PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 12) Endothelium (cluster: 16) Epidermal cells (cluster: 22) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
| GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Hindbrain rhombomere (cluster: 1) Epidermal cells (cluster: 10) |
potential marker potential marker |
NA NA |
|
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Hindbrain rhombomere (cluster: 1) Epidermal cells (cluster: 12) |
potential marker potential marker |
NA NA |
|
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Epidermal cells (cluster: 11) |
potential marker |
NA |
|
| GSE158142 (24hpf) | head | baseline | 24hpf, untreatment |
Epidermal cells (cluster: 5) Epidermal cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
| GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Epidermal cells (cluster: 5) |
potential marker |
NA |
|
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Epidermal cells (cluster: 4) |
potential marker |
NA |
|
| PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured |
Macrophages (cluster: 6) |
potential marker |
NA |
|
| PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Neutrophils (cluster: 10) Macrophages (cluster: 2) Coronary endothelial cells (cluster: 5) Macrophages (cluster: 6) Macrophages (cluster: 9) |
potential marker potential marker potential marker potential marker potential marker |
NA NA NA NA NA |
|
| PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury |
Macrophages (cluster: 1) |
potential marker |
NA |
|
| PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury |
Endocardial endothelial cells (cluster: 1) Macrophages (cluster: 6) |
potential marker potential marker |
NA NA |
|
| PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured |
Macrophages (cluster: 5) Neutrophils (cluster: 9) |
potential marker potential marker |
NA NA |
|
| PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury |
Macrophages (cluster: 2) Macrophages (cluster: 5) |
potential marker potential marker |
NA NA |
|
| PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury |
Macrophages (cluster: 2) |
potential marker |
NA |
|
| PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury |
Macrophages (cluster: 6) |
potential marker |
NA |
|
| PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver |
Smooth muscle cells (cluster: 4) Smooth muscle cells (cluster: 6) Pancreas duct epithelial cells (cluster: 7) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Smooth muscle cells (cluster: 3) |
potential marker |
NA |
|
| GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Smooth muscle cells (cluster: 3) |
potential marker |
NA |
|
| GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC |
Immune cells (cluster: 7) |
potential marker |
NA |
|
| GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC |
Immune cells (cluster: 4) Endothelium (cluster: 6) |
potential marker potential marker |
NA NA |
|
| PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Epidermal cells (cluster: 1) Epidermal cells (cluster: 4) Epidermal cells (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
| PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Epidermal cells (cluster: 2) |
potential marker |
NA |
|
| PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Lymphocyte cells (cluster: 1) Basal cells (cluster: 2) Macrophages (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
| PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours |
Basal cells (cluster: 4) |
potential marker |
NA |
|
| PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS |
Lymphocyte cells (cluster: 2) Basal cells (cluster: 6) |
potential marker potential marker |
NA NA |
|
| GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 |
Corticotropes (cluster: 3) Prop1+ group (cluster: 9) |
potential marker potential marker |
NA NA |
|
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis |
Prop1+ group (cluster: 11) Endothelium (cluster: 13) Corticotropes (cluster: 5) |
potential marker potential marker potential marker |
NA NA NA |
|
| PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Smooth muscle cells (cluster: 3) |
potential marker |
NA |
|
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg |
Rod opsin (cluster: 4) |
potential marker |
NA |
|
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Amacrine cells (cluster: 7) |
potential marker |
NA |
|
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment |
Retinal ganglion cells (cluster: 6) |
potential marker |