Fish Single-cell RNA Database

GENE ID: ENSDARG00000042725

Symbol	Location	Gene type	Genome version	Species
cebpb	8: 28448267 ~ 28449782 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000042725 (cebpb), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000091234	si:ch73-335l21.4	7: 20239915 ~ 20241413 (-)
ENSDARG00000027552	mapk1	5: 13104851 ~ 13167120 (-)
ENSDARG00000012649	smad4b	5: 6875272 ~ 6922168 (+)
ENSDARG00000008904	smarca2	5: 45138934 ~ 45284136 (+)
ENSDARG00000104773	junbb	3: 7654655 ~ 7656059 (-)
ENSDARG00000061108	ep300b	3: 24996930 ~ 25055795 (-)
ENSDARG00000070573	mapk3	3: 26211974 ~ 26222381 (-)
ENSDARG00000059836	ddit3	6: 58915889 ~ 58919086 (+)
ENSDARG00000074378	junba	1: 51732979 ~ 51734535 (-)
ENSDARG00000087646	runx1	1: 1362932 ~ 1402303 (-)
ENSDARG00000062106	klf5b	9: 30800876 ~ 30808073 (-)
ENSDARG00000070428	si:dkey-222b8.1	16: 28861342 ~ 28878080 (-)
ENSDARG00000059233	runx2b	20: 43994848 ~ 44090660 (-)
ENSDARG00000031683	fosab	20: 46552311 ~ 46554440 (-)
ENSDARG00000004111	esr1	20: 26359756 ~ 26383375 (-)
ENSDARG00000005481	nfkbiaa	20: 16881883 ~ 16884737 (+)
ENSDARG00000007823	atf3	20: 37794633 ~ 37800737 (+)
ENSDARG00000092738	si:ch211-263k4.2	8: 48095911 ~ 48242997 (+)
ENSDARG00000078324	si:ch211-263k4.2	8: 48480529 ~ 48541957 (+)
ENSDARG00000042725	cebpb	8: 28448267 ~ 28449782 (-)
ENSDARG00000037421	egr1	14: 21332522 ~ 21336385 (-)
ENSDARG00000100666	ep300a	12: 18927065 ~ 18961491 (-)
ENSDARG00000045094	si:dkey-222b8.1	19: 23932259 ~ 23970686 (+)
ENSDARG00000099555	foxo1a	15: 3284416 ~ 3379041 (+)
ENSDARG00000053666	myb	23: 31815423 ~ 31830043 (+)
ENSDARG00000031848	pparg	11: 609516 ~ 669558 (-)
ENSDARG00000061549	foxo1b	10: 31809226 ~ 31861474 (+)
ENSDARG00000030999	mybl1	24: 23791758 ~ 23817821 (+)
ENSDARG00000087303	cebpd	24: 35564668 ~ 35565927 (+)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA610520 (3.5dpf)	caudal hematopoietic tissue	baseline	3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Monocytes (cluster: 1)	marker	DOI:10.1016/j.cell.2008.01.025
PRJNA610520 (4.5dpf)	caudal hematopoietic tissue	baseline	4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.	Monocytes (cluster: 6)	marker	DOI:10.1016/j.cell.2008.01.025
PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish	Endothelium (cluster: 15) Microglia (cluster: 18)	potential marker potential marker	NA NA
PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain	Microglia (cluster: 4) Lymphocyte cells (cluster: 6)	potential marker potential marker	NA NA
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment	Microglia (cluster: 13) Eye (cluster: 17) Epithelial cells (cluster: 6)	potential marker potential marker potential marker	NA NA NA
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment	Blood,immune cell (cluster: 11) Eye (endothelial, progenitors) (cluster: 13) Glia (cluster: 7)	potential marker potential marker potential marker	NA NA NA
GSE144944 (fgfr3 -\|-)	cranial vault	growth	1mpf, fgfr3 -/-	Immune cells (cluster: 4) Epidermal cells (cluster: 5) Epidermal cells (cluster: 8)	potential marker potential marker potential marker	NA NA NA
GSE144944 (fgfr3 +\|+)	cranial vault	baseline	1mpf, fgfr3 +/+	Immune cells (cluster: 4)	potential marker	NA
GSE130526 (fin)	dorsal and anal fin	baseline	adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry	Immune cells (cluster: 5)	potential marker	NA
GSE173972 (WT, ezh1+\|+)	embryo	baseline	1.25dpf, Kdrl-positive embryos	Neutrophils (cluster: 5) Macrophages (cluster: 7)	potential marker potential marker	NA NA
GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	Neutrophils (cluster: 6) Macrophages (cluster: 8)	potential marker potential marker	NA NA
GSE173972 (KO, ezh1-\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	Neutrophils (cluster: 6)	potential marker	NA
GSE158849 (labeled)	embryo	baseline	6hpf, WT, 4sUTP injected (labeled)	Enveloping layer cells (cluster: 7)	potential marker	NA
GSE158849 (unlabeled)	embryo	baseline	6hpf, WT, 4sUTP injected (unlabeled)	Enveloping layer cells (cluster: 8)	potential marker	NA
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	More-differentiated SHFPs (cluster: 3)	potential marker	NA
PRJNA734348 (dome, control)	embryo	baseline	4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	Enveloping layer cells (cluster: 6)	potential marker	NA
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	Enveloping layer cells (cluster: 5)	potential marker	NA
PRJNA734348 (shield, control)	embryo	baseline	6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)	Enveloping layer cells (cluster: 4)	potential marker	NA
PRJNA734348 (shield, dnmt1)	embryo	growth	6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)	Enveloping layer cells (cluster: 5)	potential marker	NA
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos	Skin (cluster: 2) HR ionocytes (cluster: 5)	potential marker potential marker	NA NA
PRJNA706197 (20hpf)	embryo	baseline	20hpf, FACS sorted sox10:nEOS cells	Endothelium (cluster: 5)	potential marker	NA
PRJNA706197 (18hpf)	embryo	baseline	18hpf, FACS sorted sox10:nEOS cells	Endothelium (cluster: 3)	potential marker	NA
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Multipotent cells (cluster: 14) Monocytes (cluster: 26) Periderm cells (cluster: 4) Epidermal cells (cluster: 9)	potential marker potential marker potential marker potential marker	NA NA NA NA
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 13) Epidermal cells (cluster: 15) Epidermal cells (cluster: 16) Monocytes (cluster: 24)	potential marker potential marker potential marker potential marker	NA NA NA NA
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	Epidermal cells (cluster: 12) Epidermal cells (cluster: 14) Epidermal cells (cluster: 22) Monocytes (cluster: 28)	potential marker potential marker potential marker potential marker	NA NA NA NA
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	Periderm cells (cluster: 17)	potential marker	NA
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment	Periderm cells (cluster: 14) Blood precursors (cluster: 16)	potential marker potential marker	NA NA
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment	Epidermal cells (cluster: 11) Periderm cells (cluster: 17) Blood precursors (cluster: 20)	potential marker potential marker potential marker	NA NA NA
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment	Periderm cells (cluster: 11)	potential marker	NA
GSE158142 (24hpf)	head	baseline	24hpf, untreatment	Epidermal cells (cluster: 7)	potential marker	NA
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	Epidermal cells (cluster: 10) Neutrophils (cluster: 16)	potential marker potential marker	NA NA
GSE158142 (2dpf)	head	baseline	2dpf, untreatment	Epidermal cells (cluster: 5)	potential marker	NA
GSE158142 (3dpf)	head	baseline	3dpf, untreatment	Epidermal cells (cluster: 4)	potential marker	NA
PRJNA608912 (wt_unjuried)	heart	baseline	5mpf, wild type, uninjured	Macrophages (cluster: 6) Immune cells (cluster: 9)	potential marker potential marker	NA NA
PRJNA608912 (wt_2dpi)	heart	regeneration	5mpf, wild type, 2 days post injury	Neutrophils (cluster: 10) Macrophages (cluster: 2) Coronary endothelial cells (cluster: 5) Macrophages (cluster: 6)	potential marker potential marker potential marker potential marker	NA NA NA NA
PRJNA608912 (wt_7dpi)	heart	regeneration	5mpf, wild type, 7 days post injury	Macrophages (cluster: 1) Immune cells (cluster: 8)	potential marker potential marker	NA NA
PRJNA608912 (wt_14dpi)	heart	regeneration	5mpf, wild type, 14 days post injury	Macrophages (cluster: 6)	potential marker	NA
PRJNA608912 (kit_uninjuried)	heart	regeneration	5mpf, kit mutant, uninjured	Macrophages (cluster: 5) Macrophages (cluster: 7) Neutrophils (cluster: 9)	potential marker potential marker potential marker	NA NA NA
PRJNA608912 (kit_2dpi)	heart	regeneration	5mpf, kit mutant, 2 days post injury	Macrophages (cluster: 2) Macrophages (cluster: 5)	potential marker potential marker	NA NA
PRJNA608912 (kit_7dpi)	heart	regeneration	5mpf, kit mutant, 7 days post injury	Macrophages (cluster: 2)	potential marker	NA
PRJNA608912 (kit_14dpi)	heart	regeneration	5mpf, kit mutant, 14 days post injury	Macrophages (cluster: 6) Immune cells (cluster: 9)	potential marker potential marker	NA NA
PRJNA415636 (heart, blood)	heart, blood	baseline	adult, Zebrabow M, heart and blood	T cells (cluster: 7) Macrophages (cluster: 9)	potential marker potential marker	NA NA
PRJNA754013 (zebrafish)	hypothalamus	baseline	adult, male, female, untreatment	Microglia (cluster: 11) Macrophages (cluster: 7)	potential marker potential marker	NA NA
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC	Immune cells (cluster: 7)	potential marker	NA
GSE123241 (wild type)	neuromast	baseline	5dpf, wild type during sensory hair cell regeneration, lateral line sensory
PRJNA605021 (supporting cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae	Epidermal cells (cluster: 1)	potential marker	NA
PRJNA605021 (hair cells)	neuromast	baseline	7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae	Epidermal cells (cluster: 2)	potential marker	NA
PRJNA668529 (3d)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 days	Basal cells (cluster: 2) Endothelium (cluster: 7)	potential marker potential marker	NA NA
PRJNA668529 (3h)	olfactory rosette	disease	3mpf, intranasal 100ng r-Spike 3 hours	Lymphocyte cells (cluster: 2) Basal cells (cluster: 4) Endothelium (cluster: 7)	potential marker potential marker potential marker	NA NA NA
PRJNA668529 (control)	olfactory rosette	baseline	3mpf, intranasal PBS	Basal cells (cluster: 6) Endothelium (cluster: 7)	potential marker potential marker	NA NA
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2	Prop1+ group (cluster: 9)	potential marker	NA
GSE148591 (3mpf)	pituitary	transplant	3mpf, graft transplantation during early embryogenesis	Somatolactotropes (cluster: 1) Prop1+ group (cluster: 11)