GENE ID: ENSDARG00000007823


Symbol Location Gene type Genome version Species
atf3 20: 37794633 ~ 37800737 (+) protein_coding GRCz11 Danio rerio

  • PPI (protein-protein interaction) results are shown above.
  • Green is ENSDARG00000007823 (atf3), yellow represents other genes.
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  • MARKER



    EXPRESSION


    Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
    PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Radial glia (cluster: 13)
    potential marker
    NA
    PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Neuron (cluster: 13)
    Myeloid cells (cluster: 8)
    potential marker
    potential marker
    NA
    NA
    PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Fibroblasts (cluster: 14)
    Myeloid cells (cluster: 4)
    Epithelial cells (cluster: 9)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/- Epidermal cells (cluster: 8)
    potential marker
    NA
    GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells More-differentiated SHFPs (cluster: 3)
    potential marker
    NA
    GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells Less-differentiated SHFPs (cluster: 5)
    Proliferative SHFPs (cluster: 9)
    potential marker
    potential marker
    NA
    NA
    PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 9)
    potential marker
    NA
    PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 16)
    Chondrocytes (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Epidermal cells (cluster: 12)
    Epidermal cells (cluster: 22)
    Cranial neural crest (cluster: 3)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment Neural crest (cluster: 10)
    potential marker
    NA
    GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment Neural crest (cluster: 7)
    potential marker
    NA
    GSE158142 (24hpf) head baseline 24hpf, untreatment Epidermal cells (cluster: 5)
    potential marker
    NA
    GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Epidermal cells (cluster: 10)
    potential marker
    NA
    GSE158142 (3dpf) head baseline 3dpf, untreatment Epidermal cells (cluster: 4)
    potential marker
    NA
    PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
    PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Neutrophils (cluster: 10)
    Macrophages (cluster: 2)
    Coronary endothelial cells (cluster: 5)
    Macrophages (cluster: 6)
    potential marker
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    NA
    PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury Macrophages (cluster: 1)
    Heart primordium (cluster: 2)
    potential marker
    potential marker
    NA
    NA
    PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury Heart primordium (cluster: 2)
    potential marker
    NA
    PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured Macrophages (cluster: 5)
    Neutrophils (cluster: 9)
    potential marker
    potential marker
    NA
    NA
    PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Neutrophils (cluster: 11)
    Macrophages (cluster: 5)
    potential marker
    potential marker
    NA
    NA
    PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury Heart primordium (cluster: 4)
    potential marker
    NA
    PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Endocardial cells (cluster: 3)
    potential marker
    NA
    PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Pancreas endocrine cells (cluster: 3)
    potential marker
    NA
    PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Neuron (cluster: 2)
    potential marker
    NA
    PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Basal cells (cluster: 2)
    Neuronal progenitor (cluster: 4)
    Endothelium (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Endothelium (cluster: 3)
    Basal cells (cluster: 4)
    Endothelium (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Endothelium (cluster: 4)
    Basal cells (cluster: 6)
    Endothelium (cluster: 7)
    potential marker
    potential marker
    potential marker
    NA
    NA
    NA
    GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Gonadotrope (cluster: 5)
    Prop1+ group (cluster: 9)
    potential marker
    potential marker
    NA
    NA
    GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Prop1+ group (cluster: 11)
    potential marker
    NA
    PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Pancreas endocrine cells (cluster: 1)
    Pancreas duct epithelial cells (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    GSE175929 (5mpf) retina baseline 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg
    GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment
    PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Non-follicular epithelium (cluster: 5)
    Thyrocytes (cluster: 7)
    potential marker
    potential marker
    NA
    NA
    PRJNA551501 (8mpf) thyroid gland baseline 8mpf, Tg(tg:mVenus-T2A-NTR) Immune cells (cluster: 10)
    Non-follicular epithelium (cluster: 3)
    potential marker
    potential marker
    NA
    NA
    PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 5)
    potential marker
    NA
    GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Epidermal cells (cluster: 7)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 2.5dpf, cd41:GFPlow-WT Chondrocytes (cluster: 3)
    potential marker
    NA
    GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Neuron (cluster: 8)
    potential marker
    NA
    GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- Neutrophils (cluster: 6)
    potential marker
    NA
    PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
    GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment
    GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment
    GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
    GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
    GSE151354 (wild type) cartilage baseline 21dpf, wild type
    GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
    GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
    GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos
    PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
    GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
    PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
    PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
    GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
    GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
    PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
    PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
    PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
    GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
    GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
    PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
    GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
    PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
    PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
    PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
    PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
    GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum
    GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment
    GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment
    GSE158142 (2dpf) head baseline 2dpf, untreatment
    GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
    PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
    GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA
    GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS
    GSE150498 (DSS treated) intestine disease 6dpf, DSS treated
    GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS
    GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS
    GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated
    GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA
    GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS
    GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated
    GSE150498 (untreated ctrl) intestine baseline 6dpf, untreated ctrl
    GSE137784 (HCC, CreLox) liver disease 6mpf, male, isolated from the zebrafish without HCC
    GSE137784 (no HCC) liver baseline 6mpf, male, isolated from the CreLox zebrafish with HCC
    GSE137784 (HCC, HepABC) liver disease 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
    GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
    PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
    GSE123241 (fgf3 mutants) neuromast regeneration 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory