Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
krt4 | 6: 39308498 ~ 39313027 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 12) |
marker |
DOI:10.1016/j.cell.2008.01.025 |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 9) Epithelial cells (cluster: 15) |
marker marker |
DOI:10.1016/j.cell.2008.01.025 DOI:10.1016/j.cell.2008.01.025 |
|
GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) |
Enveloping layer cells (cluster: 7) |
marker |
DOI:10.1038/s41467-021-23834-1 |
|
GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) |
Enveloping layer cells (cluster: 8) |
marker |
DOI:10.1038/s41467-021-23834-1 |
|
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |
EVL, Periderm (cluster: 3) |
marker |
DOI:10.1126/science.aar3131 |
|
PRJNA706197 (20hpf) | embryo | baseline | 20hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 4) |
marker |
DOI:10.1016/j.celrep.2021.110140 |
|
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 2) |
marker |
DOI:10.1016/j.celrep.2021.110140 |
|
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 7) |
marker |
DOI:10.1016/j.celrep.2021.110140 |
|
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum |
Epithelialized macrophages (cluster: 2) |
marker |
DOI:10.1016/j.cell.2021.02.046 |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Microglia (cluster: 18) |
potential marker |
NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Eye (cluster: 17) |
potential marker |
NA |
|
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Periderm cells (cluster: 16) Osteoblast (cluster: 3) Epidermal cells (cluster: 5) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Osteoblast (cluster: 1) Epidermal cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry |
Epidermal cells (cluster: 3) |
potential marker |
NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo |
Epidermal cells (cluster: 4) |
potential marker |
NA |
|
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
SHFP (cluster: 10) |
potential marker |
NA |
|
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
SHFP (cluster: 10) |
potential marker |
NA |
|
PRJNA734348 (dome, control) | embryo | baseline | 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) |
Enveloping layer cells (cluster: 6) |
potential marker |
NA |
|
PRJNA734348 (dome, dnmt1) | embryo | growth | 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
Enveloping layer cells (cluster: 5) |
potential marker |
NA |
|
PRJNA734348 (shield, control) | embryo | baseline | 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) |
Enveloping layer cells (cluster: 4) |
potential marker |
NA |
|
PRJNA734348 (shield, dnmt1) | embryo | growth | 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) |
Germ ring (cluster: 1) Enveloping layer cells (cluster: 5) |
potential marker potential marker |
NA NA |
|
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos |
NCC ionocytes (cluster: 1) Skin (cluster: 2) Ionocyte progenitors (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells |
Melanoma cells (cluster: 2) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 13) Periderm cells (cluster: 4) Epidermal cells (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 13) Epidermal cells (cluster: 15) Epidermal cells (cluster: 16) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 12) Epidermal cells (cluster: 14) Epidermal cells (cluster: 22) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Epidermal cells (cluster: 10) |
potential marker |
NA |
|
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment |
Epidermal cells (cluster: 6) Epidermal cells (cluster: 9) |
potential marker potential marker |
NA NA |
|
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Epidermal cells (cluster: 12) Periderm cells (cluster: 14) |
potential marker potential marker |
NA NA |
|
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Epidermal cells (cluster: 11) Epidermal cells (cluster: 12) Placode (cluster: 4) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment |
Epidermal cells (cluster: 3) |
potential marker |
NA |
|
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment |
Epidermal cells (cluster: 7) |
potential marker |
NA |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Epidermal cells (cluster: 10) |
potential marker |
NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Epidermal cells (cluster: 5) |
potential marker |
NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Epidermal cells (cluster: 4) |
potential marker |
NA |
|
PRJNA608912 (wt_unjuried) | heart | baseline | 5mpf, wild type, uninjured |
Mesenchymal cells (cluster: 5) Coronary endothelial cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |
Fibroblasts (cluster: 3) Fibroblasts (cluster: 7) Mesenchymal cells (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA608912 (wt_7dpi) | heart | regeneration | 5mpf, wild type, 7 days post injury |
Fibroblasts (cluster: 11) Fibroblasts (cluster: 4) Mesenchymal cells (cluster: 7) Coronary endothelial cells (cluster: 9) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
PRJNA608912 (wt_14dpi) | heart | regeneration | 5mpf, wild type, 14 days post injury |
Mesenchymal cells (cluster: 8) |
potential marker |
NA |
|
PRJNA608912 (kit_uninjuried) | heart | regeneration | 5mpf, kit mutant, uninjured |
Mesenchymal cells (cluster: 11) Coronary endothelial cells (cluster: 8) |
potential marker potential marker |
NA NA |
|
PRJNA608912 (kit_2dpi) | heart | regeneration | 5mpf, kit mutant, 2 days post injury |
Coronary endothelial cells (cluster: 12) Fibroblasts (cluster: 4) Mesenchymal cells (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA608912 (kit_7dpi) | heart | regeneration | 5mpf, kit mutant, 7 days post injury |
Coronary endothelial cells (cluster: 10) Fibroblasts (cluster: 4) Mesenchymal cells (cluster: 7) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA608912 (kit_14dpi) | heart | regeneration | 5mpf, kit mutant, 14 days post injury |
Mesenchymal cells (cluster: 8) |
potential marker |
NA |
|
PRJNA415636 (heart, blood) | heart, blood | baseline | adult, Zebrabow M, heart and blood |
Smooth muscle cells (cluster: 11) Fibroblasts (cluster: 12) |
potential marker potential marker |
NA NA |
|
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Enterocytes (cluster: 4) |
potential marker |
NA |
|
GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Enterocytes (cluster: 2) |
potential marker |
NA |
|
GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Support cells (cluster: 2) |
potential marker |
NA |
|
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |