GENE ID: ENSDARG00000100825


Symbol Location Gene type Genome version Species
calm3a 15: 9234052 ~ 9272328 (-) protein_coding GRCz11 Danio rerio

MARKER



EXPRESSION


Dataset ID Tissue / Organ Experiment type Sample Cell type Marker class Evidence
PRJNA554650 (6.5dpf) brain baseline 6.5dpf, whole brain of nr1d1:VNP fish Midbrain Glut+ (cluster: 1)
Pallium (Glut+) (cluster: 4)
potential marker
potential marker
NA
NA
GSE158142 (8dpf) brain, eye baseline 8dpf, untreatment Neuron (cluster: 1)
potential marker
NA
GSE158142 (15dpf) brain, eye baseline 15dpf, untreatment Neuron (cluster: 2)
potential marker
NA
PRJNA610520 (3.5dpf) caudal hematopoietic tissue baseline 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. Neuron (cluster: 13)
Neuron (cluster: 7)
potential marker
potential marker
NA
NA
GSE173972 (WT, ezh1+|+) embryo baseline 1.25dpf, Kdrl-positive embryos Neuron (cluster: 2)
potential marker
NA
GSE106587 (WT) embryo baseline 12hpf, 6 somites, wild-type TLAB embryo
GSE106587 (MZoep mutant) embryo baseline 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
PRJNA656271 (1.5dpf) embryo baseline 1.5dpf, FACS-isolated EGFP+ cells
PRJNA564810 (5dpf) embryo baseline 5dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 3)
potential marker
NA
PRJNA564810 (2dpf) embryo baseline 2dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 4)
potential marker
NA
PRJNA564810 (1dpf) embryo baseline 1dpf, a single-cell transcriptome atlas for zebrafish development Neuron (cluster: 13)
potential marker
NA
GSE161712 (M. marinum) granulomas disease adult, infected with bacteria of M. marinum Epithelialized macrophages (cluster: 2)
Proliferating cells (cluster: 5)
potential marker
potential marker
NA
NA
GSE158142 (12hpf) head baseline 12hpf, 6 somites, untreatment Hindbrain rhombomere (cluster: 1)
potential marker
NA
GSE158142 (18hpf) head baseline 18hpf, 18 somites, untreatment Cycling progenitors (cluster: 2)
potential marker
NA
GSE158142 (1.5dpf) head baseline 1.5dpf, untreatment Neuron (cluster: 5)
potential marker
NA
GSE158142 (3dpf) head baseline 3dpf, untreatment Neuron (cluster: 1)
potential marker
NA
PRJNA608912 (wt_2dpi) heart regeneration 5mpf, wild type, 2 days post injury Fibroblasts (cluster: 7)
potential marker
NA
PRJNA608912 (kit_2dpi) heart regeneration 5mpf, kit mutant, 2 days post injury Fibroblasts (cluster: 4)
potential marker
NA
PRJNA415636 (heart, blood) heart, blood baseline adult, Zebrabow M, heart and blood Cardiomyocytes (cluster: 1)
potential marker
NA
PRJNA415636 (pancreas, liver) hepatopancreas baseline adult, Zebrabow M, pancreas and liver Pancreas endocrine cells (cluster: 1)
potential marker
NA
PRJNA754013 (zebrafish) hypothalamus baseline adult, male, female, untreatment Neuron (cluster: 3)
Neuron (cluster: 5)
potential marker
potential marker
NA
NA
GSE150498 (wildtype, untreated) intestine baseline 6dpf, wildtype, untreated Enteroendocrine + ILC3 (cluster: 4)
potential marker
NA
GSE150498 (nod2-|-, untreated) intestine disease 6dpf, nod2-/-, untreated Enteroendocrine + ILC3 (cluster: 6)
potential marker
NA
GSE150498 (wildtype, 1X DSS) intestine disease 6dpf, wildtype, 1X DSS Enteroendocrine + ILC3 (cluster: 10)
potential marker
NA
GSE150498 (nod2-|-, 1X DSS) intestine disease 6dpf, nod2-/-, 1X DSS Enteroendocrine + ILC3 (cluster: 10)
potential marker
NA
GSE150498 (wildtype, 2X DSS) intestine disease 6dpf, wildtype, 2X DSS Enteroendocrine + ILC3 (cluster: 7)
potential marker
NA
GSE150498 (wildtype, 2X DSS+BZA) intestine disease 6dpf, wildtype, 2X DSS+BZA Enteroendocrine + ILC3 (cluster: 8)
potential marker
NA
GSE150498 (nod2-|-, 2X DSS) intestine disease 6dpf, nod2-/-, 2X DSS Enteroendocrine + ILC3 (cluster: 10)
potential marker
NA
GSE150498 (nod2-|-, 2X DSS+BZA) intestine disease 6dpf, nod2-/-, 2X DSS+BZA Enteroendocrine + ILC3 (cluster: 10)
potential marker
NA
GSE123241 (wild type) neuromast baseline 5dpf, wild type during sensory hair cell regeneration, lateral line sensory Hair cells (cluster: 7)
potential marker
NA
PRJNA605021 (supporting cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae Support cells (cluster: 7)
potential marker
NA
PRJNA605021 (hair cells) neuromast baseline 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae Hair cells (cluster: 1)
potential marker
NA
PRJNA668529 (3d) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 days Ciliated olfactory sensory neuron (cluster: 5)
Microvillus olfactory sensory neuron (cluster: 8)
potential marker
potential marker
NA
NA
PRJNA668529 (3h) olfactory rosette disease 3mpf, intranasal 100ng r-Spike 3 hours Ciliated olfactory sensory neuron (cluster: 1)
Microvillus olfactory sensory neuron (cluster: 5)
potential marker
potential marker
NA
NA
PRJNA668529 (control) olfactory rosette baseline 3mpf, intranasal PBS Microvillus olfactory sensory neuron (cluster: 3)
potential marker
NA
GSE148591 (6mpf) pituitary baseline 6mpf, male, Sox17:CreERT2 Prop1+ group (cluster: 9)
potential marker
NA
GSE148591 (3mpf) pituitary transplant 3mpf, graft transplantation during early embryogenesis Somatolactotropes (cluster: 1)
Prop1+ group (cluster: 11)
potential marker
potential marker
NA
NA
PRJNA415636 (primary pancreatic islet) primary pancreatic islet baseline adult, Zebrabow M, primary pancreatic islet Pancreas endocrine cells (cluster: 1)
potential marker
NA
GSE122680 (24hpf) retina baseline 24hpf, WT, untreatment Retinal progenitors (cluster: 3)
potential marker
NA
GSE122680 (3dpf) retina baseline 3dpf, WT, untreatment Retinal ganglion cells (cluster: 5)
potential marker
NA
GSE122680 (14dpf) retina baseline 14dpf, WT, untreatment Bipolar cells (cluster: 2)
potential marker
NA
GSE122680 (2dpf) retina baseline 2dpf, WT, untreatment Amacrine cells (cluster: 10)
Retinal progenitors (cluster: 3)
Amacrine cells (cluster: 10)
Retinal progenitors (cluster: 3)
potential marker
potential marker
potential marker
potential marker
NA
NA
NA
NA
PRJNA672101 (nrl-KO) retina growth 5mpf, three retinas from nrl-KO zebrafsih Retinal ganglion cells (cluster: 6)
potential marker
NA
PRJNA551501 (2mpf) thyroid gland baseline 2mpf, Tg(tg:mVenus-T2A-NTR) Thyrocytes (cluster: 7)
potential marker
NA
GSE152982 (wild type) trunk baseline 1.25dpf, untreatment Neuron (cluster: 6)
potential marker
NA
GSE131136 (all) trunk, skin baseline 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone Neuron (cluster: 13)
Proliferating progenitors (cluster: 14)
Neuron (cluster: 15)
potential marker
potential marker
potential marker
NA
NA
NA
PRJNA641144 (P_INV) tumor disease adult, ZMEL1-INV cells in vivo primary tumors Melanoma cells (cluster: 4)
potential marker
NA
PRJNA641144 (P_PRO) tumor disease adult, ZMEL1-PRO cells in vivo primary tumors Melanoma cells (cluster: 2)
potential marker
NA
GSE176129 (pdgfrb-positive) whole body baseline 5dpf, FACS-isolated pdgfrb-positive cells Neuron (cluster: 23)
potential marker
NA
GSE158099 (runx1 -|-) whole body hematopoietic 10dpf, cd41:GFPlow-runx1-/- Multipotent cells (cluster: 2)
potential marker
NA
GSE158099 (WT) whole body baseline 16dpf, cd41:GFPlow-WT Multipotent cells (cluster: 6)
potential marker
NA
GSE158099 (runx1 -|-) whole body hematopoietic 16dpf, cd41:GFPlow-runx1-/- HSPCs (cluster: 2)
potential marker
NA
PRJNA415636 (brain) brain baseline adult, Zebrabow M, brain
GSE158142 (5dpf) brain, eye baseline 5dpf, untreatment
GSE151354 (nkx3.2 mutant) cartilage growth 21dpf, nkx3.2 mutant
GSE151354 (wild type) cartilage baseline 21dpf, wild type
PRJNA610520 (4.5dpf) caudal hematopoietic tissue baseline 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells.
GSE144944 (fgfr3 -|-) cranial vault growth 1mpf, fgfr3 -/-
GSE144944 (fgfr3 +|+) cranial vault baseline 1mpf, fgfr3 +/+
GSE130526 (fin) dorsal and anal fin baseline adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry
PRJNA706197 (24hpf) embryo baseline 24hpf, FACS sorted sox10:nEOS cells
GSE173972 (HET, ezh1+|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
PRJNA706197 (12hpf) embryo baseline 12hpf, FACS sorted sox10:nEOS cells
GSE168695 (5dpf) embryo baseline 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA734348 (shield, control) embryo baseline 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (control) embryo baseline 1.17dpf, control nkx2.5:ZsYellow+ cells
PRJNA706197 (1.25dpf) embryo baseline 1.25dpf, FACS sorted sox10:nEOS cells
GSE158849 (labeled) embryo baseline 6hpf, WT, 4sUTP injected (labeled)
PRJNA656271 (2dpf) embryo baseline 2dpf, FACS-isolated EGFP+ cells
GSE173972 (KO, ezh1-|-) embryo hematopoietic 1.25dpf, Kdrl-positive embryos
PRJNA706197 (14hpf) embryo baseline 14hpf, FACS sorted sox10:nEOS cells
PRJNA734348 (shield, dnmt1) embryo growth 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
PRJNA640816 (2dpf) embryo baseline 2dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA734348 (dome, control) embryo baseline 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV)
GSE126647 (Pbx4-depleted) embryo growth 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA706197 (18hpf) embryo baseline 18hpf, FACS sorted sox10:nEOS cells
GSE158849 (unlabeled) embryo baseline 6hpf, WT, 4sUTP injected (unlabeled)
PRJNA706197 (20hpf) embryo baseline 20hpf, FACS sorted sox10:nEOS cells
PRJNA640816 (2.9dpf) embryo baseline 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA656271 (24hpf) embryo baseline 24hpf, FACS-isolated EGFP+ cells
PRJNA734348 (dome, dnmt1) embryo growth 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE158142 (24hpf) head baseline 24hpf, untreatment
GSE158142 (16hpf) head baseline 16hpf, 14 somites, untreatment
GSE158142 (2dpf) head baseline 2dpf, untreatment
GSE158142 (20hpf) head baseline 20hpf, 21-22 somites, untreatment
GSE158142 (14hpf) head baseline 14hpf, 10 somites, untreatment
PRJNA608912 (kit_uninjuried) heart regeneration 5mpf, kit mutant, uninjured
PRJNA608912 (wt_7dpi) heart regeneration 5mpf, wild type, 7 days post injury
PRJNA608912 (kit_7dpi) heart regeneration 5mpf, kit mutant, 7 days post injury
PRJNA608912 (wt_14dpi) heart regeneration 5mpf, wild type, 14 days post injury
PRJNA608912 (wt_unjuried) heart baseline 5mpf, wild type, uninjured
PRJNA608912 (kit_14dpi) heart regeneration 5mpf, kit mutant, 14 days post injury