Fish Single-cell RNA Database

CELL TYPE: Midbrain Glut+

Distribution of Midbrain Glut+ in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000018817	bdnf	7: 31924983 ~ 31941670 (-)
ENSDARG00000059815	oaz2b	7: 48288762 ~ 48296227 (+)
ENSDARG00000022315	atp6v1g1	5: 57320113 ~ 57325557 (+)
ENSDARG00000035519	histh1l	5: 27432958 ~ 27434351 (+)
ENSDARG00000033009	h3f3c	5: 36944533 ~ 36949476 (-)
ENSDARG00000014746	rbfox1	3: 27982269 ~ 28428198 (-)
ENSDARG00000009311	pvalb6	3: 24297482 ~ 24434905 (+)
ENSDARG00000007654	nsfa	3: 34766989 ~ 34801041 (-)
ENSDARG00000032619	tob1a	3: 18185616 ~ 18189283 (-)
ENSDARG00000027957	fgf12a	2: 5587495 ~ 5681658 (+)
ENSDARG00000025855	camk2n1a	2: 44943396 ~ 44946094 (-)
ENSDARG00000004621	gpm6ab	1: 38649141 ~ 38756904 (-)
ENSDARG00000018997	cplx2l	1: 12262980 ~ 12278581 (-)
ENSDARG00000023600	sh3gl2a	1: 26740718 ~ 26782573 (-)
ENSDARG00000010010	trim13	9: 29642857 ~ 29654998 (+)
ENSDARG00000097528	si:dkey-7j14.5	16: 43014417 ~ 43026273 (-)
ENSDARG00000033655	stmn1b	16: 34523515 ~ 34527206 (+)
ENSDARG00000039914	gapdhs	16: 45044642 ~ 45069882 (-)
ENSDARG00000043257	ckbb	20: 20816747 ~ 20821789 (-)
ENSDARG00000030106	stmn4	20: 34773646 ~ 34868814 (-)
ENSDARG00000020609	snap25a	20: 34913069 ~ 34956230 (+)
ENSDARG00000031683	fosab	20: 46552311 ~ 46554440 (-)
ENSDARG00000034187	calm1b	20: 16743056 ~ 16775258 (+)
ENSDARG00000009106	serinc1	20: 40457599 ~ 40472519 (+)
ENSDARG00000021811	calm1a	17: 26713111 ~ 26721007 (-)
ENSDARG00000055752	npas4a	14: 30636955 ~ 30642819 (-)
ENSDARG00000104945	sncb	14: 50770537 ~ 50804016 (+)
ENSDARG00000041062	calb2a	18: 21198762 ~ 21218851 (-)
ENSDARG00000014287	eno2	19: 5072918 ~ 5090732 (+)
ENSDARG00000035715	marcksl1b	19: 29798064 ~ 29800812 (+)
ENSDARG00000100825	calm3a	15: 9234052 ~ 9272328 (-)
ENSDARG00000071658	ywhag2	15: 15348490 ~ 15357178 (-)
ENSDARG00000045945	syn2a	23: 4751959 ~ 4775446 (-)
ENSDARG00000045944	slc6a1a	23: 4834447 ~ 4855122 (-)
ENSDARG00000099203	atp1b2a	23: 44732863 ~ 44763861 (+)
ENSDARG00000022456	eno1a	23: 22656477 ~ 22678882 (+)
ENSDARG00000077799	egr4	23: 45579497 ~ 45581626 (+)
ENSDARG00000019702	aldocb	21: 39608637 ~ 39639954 (-)
ENSDARG00000101387	NA	11: 3550370 ~ 3552067 (-)
ENSDARG00000070083	atp5f1b	11: 13207898 ~ 13213059 (+)
ENSDARG00000004060	bhlhe40	11: 35759652 ~ 35763323 (-)
ENSDARG00000086881	ier2b	11: 31038409 ~ 31039533 (-)
ENSDARG00000053130	pcp4a	10: 38969429 ~ 39011514 (-)
ENSDARG00000104458	rnasekb	10: 22916113 ~ 22918214 (-)
ENSDARG00000036577	atp6v0cb	24: 39158283 ~ 39175750 (+)
ENSDARG00000077151	cbln2b	24: 15642577 ~ 15648878 (-)
ENSDARG00000071860	nrn1a	24: 2519761 ~ 2524955 (+)
ENSDARG00000003655	tmem59l	22: 21128113 ~ 21150845 (-)
ENSDARG00000019881	bsg	22: 18929412 ~ 18946453 (+)
ENSDARG00000059057	atpv0e2	22: 34701848 ~ 34707460 (+)
ENSDARG00000103002	nptna	25: 29315924 ~ 29363934 (-)

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Midbrain Glut+.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	PRJNA554650 (6.5dpf)	Danio rerio	brain	1	Midbrain Glut+	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000009311 (pvalb6)	marker	DOI:10.1038/nbt.4103

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Midbrain Glut+

Distribution of Midbrain Glut+ in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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