Fish Single-cell RNA Database

GENE ID: ENSDARG00000087359

Symbol	Location	Gene type	Genome version	Species
c3a.2	1: 56229674 ~ 56266731 (+)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000087359 (c3a.2), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000045672	il26	4: 13535054 ~ 13538714 (-)
ENSDARG00000021004	c5	5: 63458263 ~ 63509581 (-)
ENSDARG00000068220	mbl2	2: 37887277 ~ 37889152 (-)
ENSDARG00000039517	c8b	2: 1478225 ~ 1518360 (-)
ENSDARG00000039516	c8a	2: 1486822 ~ 1499584 (+)
ENSDARG00000087359	c3a.2	1: 56229674 ~ 56266731 (+)
ENSDARG00000100599	c1s	16: 31676281 ~ 31686602 (-)
ENSDARG00000100248	c1r	16: 31662256 ~ 31675736 (-)
ENSDARG00000078114	si:ch73-237c6.1	8: 23689992 ~ 23701880 (-)
ENSDARG00000094451	cfp	8: 23672254 ~ 23702295 (-)
ENSDARG00000055786	prss23	14: 30802465 ~ 30808174 (-)
ENSDARG00000039579	cfd	13: 13681681 ~ 13684334 (+)
ENSDARG00000044414	csmd1a	13: 6342410 ~ 6582725 (+)
ENSDARG00000019742	tlr4ba	13: 18514788 ~ 18517453 (+)
ENSDARG00000002956	si:dkey-32n7.4	12: 4114401 ~ 4145033 (+)
ENSDARG00000096587	itgam	12: 4147714 ~ 4167750 (+)
ENSDARG00000068726	masp1	15: 36187434 ~ 36223417 (+)
ENSDARG00000007988	masp2	23: 28770225 ~ 28796157 (+)
ENSDARG00000056075	rca2.1	23: 26094481 ~ 26120281 (-)
ENSDARG00000095512	rca2.2	23: 26125676 ~ 26128664 (-)
ENSDARG00000031749	NA	10: 1899595 ~ 1900662 (+)
ENSDARG00000032098	c8g	24: 17031129 ~ 17039638 (-)
ENSDARG00000100442	cfh	22: 23641801 ~ 23668468 (-)
ENSDARG00000105212	cfhl1	22: 23693195 ~ 23706771 (-)
ENSDARG00000103760	cfhl2	22: 23734001 ~ 23748284 (-)
ENSDARG00000104205	cfhl3	22: 23767557 ~ 23781213 (-)
ENSDARG00000079983	agbl2	25: 28596989 ~ 28638098 (-)
--	cfi	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Hepatocytes (cluster: 20)	potential marker	NA
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated	Hepatocytes (cluster: 9)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enteroendocrine + ILC3 (cluster: 7)	potential marker	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 8)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE137784 (HCC, CreLox)	liver	disease	6mpf, male, isolated from the zebrafish without HCC	Hepatocytes (cluster: 5)	potential marker	NA
GSE137784 (no HCC)	liver	baseline	6mpf, male, isolated from the CreLox zebrafish with HCC	Hepatocytes (cluster: 1)	potential marker	NA
PRJNA415636 (primary pancreatic islet)	primary pancreatic islet	baseline	adult, Zebrabow M, primary pancreatic islet	Pancreas endocrine cells (cluster: 9)	potential marker	NA
PRJNA641144 (M_PRO)	tumor	disease	adult, ZMEL1-PRO cells in vivo metastases	Melanoma cells (cluster: 8)	potential marker	NA
GSE151354 (wild type)	cartilage	baseline	21dpf, wild type
PRJNA734348 (dome, dnmt1)	embryo	growth	4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV)
GSE168695 (5dpf)	embryo	baseline	5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos
PRJNA640816 (2.9dpf)	embryo	baseline	2.9dpf, FACS isolated -4.9sox10:EGFP+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA415636 (pancreas, liver)	hepatopancreas	baseline	adult, Zebrabow M, pancreas and liver
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS
GSE137784 (HCC, HepABC)	liver	disease	6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC
GSE123241 (fgf3 mutants)	neuromast	regeneration	5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory
GSE148591 (6mpf)	pituitary	baseline	6mpf, male, Sox17:CreERT2
GSE163907 (24hpf)	trunk	baseline	24hpf, trunk tg(sox10:GFP) positive cells
PRJNA641144 (M_INV)	tumor	disease	adult, ZMEL1-INV cells in vivo metastases
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: ENSDARG00000087359

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences