Fish Single-cell RNA Database

GENE ID: --

Symbol	Location	Gene type	Genome version	Species
scn1a	--	--	--	Danio rerio

PPI (protein-protein interaction) results are shown above.

Green is -- (scn1a), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000041205	slc6a1l	4: 26972862 ~ 27079859 (+)
ENSDARG00000060319	scn4bb	5: 37918810 ~ 37935621 (-)
ENSDARG00000018032	scn8ab	6: 39392442 ~ 39489190 (-)
ENSDARG00000091130	kcnq2b	6: 58406014 ~ 58499844 (+)
ENSDARG00000023771	gabrb3	6: 38381957 ~ 38513578 (+)
ENSDARG00000074558	cntnap2b	2: 50276755 ~ 50372467 (-)
ENSDARG00000060085	kcnq3	2: 43001512 ~ 43083755 (-)
ENSDARG00000060222	scn1ba	16: 41873708 ~ 41897745 (+)
ENSDARG00000006602	chrna2a	17: 6079881 ~ 6101820 (+)
ENSDARG00000034344	pcdh19	14: 40300961 ~ 40390757 (-)
ENSDARG00000060687	chd2	18: 24933473 ~ 24989580 (-)
ENSDARG00000098738	scn4aa	12: 4869248 ~ 4893492 (+)
ENSDARG00000105003	scn1bb	19: 206835 ~ 212478 (+)
ENSDARG00000062359	scn3b	15: 22133839 ~ 22147860 (-)
ENSDARG00000101713	scn2b	15: 12521379 ~ 12545683 (-)
ENSDARG00000079484	kcnt1	21: 4875473 ~ 4923427 (-)
ENSDARG00000001994	stxbp1a	21: 13861589 ~ 13921022 (+)
ENSDARG00000053665	gabrg2	21: 41903760 ~ 42007482 (-)
ENSDARG00000068989	gabra1	21: 42050351 ~ 42100471 (-)
ENSDARG00000099325	gig2i	21: 22672794 ~ 22673758 (-)
ENSDARG00000015240	cdkl5	11: 30161168 ~ 30232133 (+)
ENSDARG00000079474	NA	10: 31624143 ~ 31634427 (+)
--	scn1a	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE150498 (nod2-\|-, untreated)	intestine	disease	6dpf, nod2-/-, untreated	Enteroendocrine + ILC3 (cluster: 6)	potential marker	NA
GSE150498 (wildtype, 1X DSS)	intestine	disease	6dpf, wildtype, 1X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (nod2-\|-, 1X DSS)	intestine	disease	6dpf, nod2-/-, 1X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (wildtype, 2X DSS)	intestine	disease	6dpf, wildtype, 2X DSS	Enteroendocrine + ILC3 (cluster: 7)	potential marker	NA
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 8)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS)	intestine	disease	6dpf, nod2-/-, 2X DSS	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE150498 (nod2-\|-, 2X DSS+BZA)	intestine	disease	6dpf, nod2-/-, 2X DSS+BZA	Enteroendocrine + ILC3 (cluster: 10)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (DSS treated)	intestine	disease	6dpf, DSS treated
GSE150498 (wildtype, untreated)	intestine	baseline	6dpf, wildtype, untreated
GSE122680 (14dpf)	retina	baseline	14dpf, WT, untreatment

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

GENE ID: --

MARKER

EXPRESSION

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