Fish Single-cell RNA Database

GENE ID: ENSDARG00000015879

Symbol	Location	Gene type	Genome version	Species
pax8	5: 72407526 ~ 72415578 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000015879 (pax8), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000101540	fgf3	7: 54605640 ~ 54609108 (+)
ENSDARG00000015879	pax8	5: 72407526 ~ 72415578 (-)
ENSDARG00000017174	dlx2b	1: 30977936 ~ 30979707 (-)
ENSDARG00000079266	foxe1	1: 26701610 ~ 26702992 (-)
ENSDARG00000006220	ugt1a1	9: 9969987 ~ 10003782 (-)
ENSDARG00000020084	tg	16: 31530762 ~ 31598771 (-)
ENSDARG00000026473	six1b	20: 20499869 ~ 20505918 (+)
ENSDARG00000037195	tshr	20: 6035427 ~ 6079923 (+)
ENSDARG00000005392	slc5a5	8: 13364950 ~ 13382351 (+)
ENSDARG00000019835	nkx2.1	17: 38262408 ~ 38264625 (+)
ENSDARG00000094857	dio2	17: 16873417 ~ 16876752 (+)
ENSDARG00000070955	hmx3a	17: 21790606 ~ 21793113 (-)
ENSDARG00000069715	foxi2	13: 13578552 ~ 13581133 (+)
ENSDARG00000039304	six1a	13: 31619961 ~ 31622195 (-)
ENSDARG00000058004	six2a	13: 10232695 ~ 10235565 (+)
ENSDARG00000055305	ret	13: 25584556 ~ 25632756 (-)
ENSDARG00000014626	dlx3b	12: 5708400 ~ 5711920 (+)
ENSDARG00000071560	dlx4b	12: 5719616 ~ 5728755 (-)
ENSDARG00000054878	six2b	12: 25610019 ~ 25612170 (-)
ENSDARG00000104566	foxi1	12: 43662980 ~ 43664682 (-)
ENSDARG00000056605	wbp2	12: 45200744 ~ 45218478 (+)
ENSDARG00000014018	lhx1a	15: 27703409 ~ 27710575 (-)
ENSDARG00000006615	hnf1ba	15: 15997149 ~ 16012963 (-)
ENSDARG00000014259	eya1	24: 13869092 ~ 14015459 (+)
ENSDARG00000031420	wt1a	25: 15178225 ~ 15214161 (-)
ENSDARG00000031138	irx3b	25: 36488164 ~ 36492779 (-)
--	hoxa3a	--

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	Placode (cluster: 11)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE106587 (WT)	embryo	baseline	12hpf, 6 somites, wild-type TLAB embryo	Heart primordium (cluster: 6)	potential marker	NA
GSE158099 (WT)	whole body	baseline	2.5dpf, cd41:GFPlow-WT	Epidermal cells (cluster: 12)	potential marker	NA
GSE158142 (5dpf)	brain, eye	baseline	5dpf, untreatment
GSE158142 (8dpf)	brain, eye	baseline	8dpf, untreatment
GSE158142 (15dpf)	brain, eye	baseline	15dpf, untreatment
GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo
GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells
GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells
PRJNA564810 (2dpf)	embryo	baseline	2dpf, a single-cell transcriptome atlas for zebrafish development
PRJNA564810 (1dpf)	embryo	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development
GSE158142 (14hpf)	head	baseline	14hpf, 10 somites, untreatment
GSE158142 (16hpf)	head	baseline	16hpf, 14 somites, untreatment
GSE158142 (18hpf)	head	baseline	18hpf, 18 somites, untreatment
GSE158142 (20hpf)	head	baseline	20hpf, 21-22 somites, untreatment
GSE158142 (24hpf)	head	baseline	24hpf, untreatment
GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment
GSE158142 (2dpf)	head	baseline	2dpf, untreatment
GSE158142 (3dpf)	head	baseline	3dpf, untreatment
GSE150498 (untreated ctrl)	intestine	baseline	6dpf, untreated ctrl
GSE150498 (wildtype, 2X DSS+BZA)	intestine	disease	6dpf, wildtype, 2X DSS+BZA
GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment
GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment
GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment
GSE122680 (2dpf)	retina	baseline	2dpf, WT, untreatment
PRJNA551501 (2mpf)	thyroid gland	baseline	2mpf, Tg(tg:mVenus-T2A-NTR)
PRJNA551501 (8mpf)	thyroid gland	baseline	8mpf, Tg(tg:mVenus-T2A-NTR)
GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells
GSE158099 (runx1 -\|-)	whole body	hematopoietic	2.5dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	6dpf, cd41:GFPlow-runx1-/-
GSE158099 (runx1 -\|-)	whole body	hematopoietic	16dpf, cd41:GFPlow-runx1-/-

After clicking the magnifying glass button, the clustering and expression information will be displayed below.

GENE ID: ENSDARG00000015879

MARKER

EXPRESSION

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences