Fish Single-cell RNA Database

CELL TYPE: Telencephalon

Distribution of Telencephalon in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000011582	sox5	4: 16982249 ~ 17055950 (-)
ENSDARG00000068432	si:dkey-56m19.5	7: 44713135 ~ 44717498 (+)
ENSDARG00000059950	plxdc2	7: 41517173 ~ 41627956 (-)
ENSDARG00000103682	si:dkey-23i12.5	7: 25042078 ~ 25046752 (+)
ENSDARG00000077256	nat8l	7: 24457191 ~ 24472991 (-)
ENSDARG00000036036	mdka	7: 39166460 ~ 39178198 (+)
ENSDARG00000070107	six7	7: 7401692 ~ 7420301 (-)
ENSDARG00000035970	ptprn2	7: 40228422 ~ 40499386 (+)
ENSDARG00000045936	pax6b	7: 15871156 ~ 15900606 (+)
ENSDARG00000103515	vcana	5: 46424437 ~ 46486028 (+)
ENSDARG00000075347	chfr	5: 17780475 ~ 17813299 (+)
ENSDARG00000104100	bmpr1ba	5: 7488064 ~ 7712160 (-)
ENSDARG00000035133	pho	5: 62319217 ~ 62335694 (+)
ENSDARG00000022531	ntn1b	3: 25708549 ~ 25814097 (-)
ENSDARG00000097523	si:ch73-364h19.1	3: 60146309 ~ 60175470 (-)
ENSDARG00000014522	cdh6	2: 28049046 ~ 28102264 (-)
ENSDARG00000101766	ptmab	2: 5131964 ~ 5135125 (-)
ENSDARG00000069595	si:ch211-214c7.4	1: 45707219 ~ 45744854 (+)
ENSDARG00000005479	tenm3	1: 39387876 ~ 39779913 (+)
ENSDARG00000008131	sox1b	1: 46194333 ~ 46196107 (+)
ENSDARG00000017591	fat1a	1: 17376922 ~ 17524922 (+)
ENSDARG00000015554	zic2a	9: 31282161 ~ 31287010 (+)
ENSDARG00000020164	efnb2a	9: 26103814 ~ 26127305 (+)
ENSDARG00000025789	chd4b	16: 31761825 ~ 31791165 (-)
ENSDARG00000086950	si:ch211-269k10.2	16: 53203370 ~ 53247374 (+)
ENSDARG00000098802	map7d1a	16: 35661331 ~ 35776074 (+)
ENSDARG00000070081	rspo3	16: 40301056 ~ 40339027 (+)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000056666	sp8b	16: 19536614 ~ 19538776 (+)
ENSDARG00000017107	nr2e1	20: 32437396 ~ 32446406 (-)
ENSDARG00000010785	thbs1b	20: 29036328 ~ 29052391 (-)
ENSDARG00000043531	jun	20: 15552657 ~ 15554606 (+)
ENSDARG00000018693	cdh2	20: 17581881 ~ 17819238 (+)
ENSDARG00000041895	cad	20: 38788319 ~ 38827623 (-)
ENSDARG00000031222	lhx2b	8: 3085120 ~ 3101392 (+)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000102778	fgf17	8: 52732107 ~ 52745168 (-)
ENSDARG00000077811	sox11a	17: 35878544 ~ 35881841 (-)
ENSDARG00000070769	foxg1a	17: 29117027 ~ 29119362 (-)
ENSDARG00000054302	ehd4	17: 29195962 ~ 29213710 (-)
ENSDARG00000032617	fgfrl1a	14: 17442913 ~ 17563773 (-)
ENSDARG00000037488	canx	14: 16432738 ~ 16476863 (-)
ENSDARG00000020417	emx3	14: 26363537 ~ 26377044 (-)
ENSDARG00000058008	six3a	13: 10258007 ~ 10261383 (-)
ENSDARG00000058115	fgfr2	13: 46298560 ~ 46429433 (-)
ENSDARG00000076895	flrt3	13: 33811842 ~ 33822550 (-)
ENSDARG00000039041	sfrp5	13: 39911551 ~ 39947335 (-)
ENSDARG00000040926	nr2f2	18: 23868650 ~ 24023013 (-)
ENSDARG00000013207	zeb1b	12: 26750274 ~ 26851726 (-)
ENSDARG00000088984	cep131	12: 35836610 ~ 35885349 (-)
ENSDARG00000035694	stm	19: 3137518 ~ 3167878 (-)
ENSDARG00000030479	hmgb1b	15: 31513065 ~ 31516583 (-)
ENSDARG00000020946	auts2b	15: 20004766 ~ 20024205 (-)
ENSDARG00000017673	nova2	15: 28685625 ~ 28766824 (+)
ENSDARG00000074526	zbtb16b	15: 18253542 ~ 18361475 (-)
ENSDARG00000056732	her4.1	23: 21452557 ~ 21453614 (-)
ENSDARG00000056181	ncam1a	21: 23338059 ~ 23746947 (-)
ENSDARG00000079286	bcr	21: 17110598 ~ 17261078 (+)
ENSDARG00000061794	jam3b	21: 24984970 ~ 25046991 (+)
ENSDARG00000089790	efna5a	21: 20488662 ~ 20636817 (+)
ENSDARG00000061640	sipa1l2	11: 31323746 ~ 31473982 (+)
ENSDARG00000070677	fezf2	11: 20056732 ~ 20059407 (+)
ENSDARG00000021838	rps23	11: 42556395 ~ 42561215 (+)
ENSDARG00000030297	sox13	11: 37768298 ~ 37831776 (+)
ENSDARG00000075625	lrig1	11: 16329776 ~ 16395956 (-)
ENSDARG00000054560	her15.2	11: 41994287 ~ 41996957 (-)
ENSDARG00000038205	her2	11: 41966117 ~ 41966854 (-)
ENSDARG00000054562	her15.1	11: 41981959 ~ 41984487 (+)
ENSDARG00000020884	gli2b	11: 43661735 ~ 43713750 (+)
ENSDARG00000060734	hesx1	11: 42600731 ~ 42635440 (+)
ENSDARG00000005645	robo3	10: 31298972 ~ 31563049 (-)
ENSDARG00000020080	ek1	24: 27548474 ~ 27715238 (+)
ENSDARG00000045444	fzd8a	24: 4447635 ~ 4450238 (-)
ENSDARG00000059333	si:ch211-285f17.1	24: 9372292 ~ 9598456 (+)
ENSDARG00000075542	zfhx4	24: 23241444 ~ 23323526 (-)
ENSDARG00000040884	mxi1	22: 30330574 ~ 30361078 (+)
ENSDARG00000034013	rgmd	22: 19640309 ~ 19646421 (+)
ENSDARG00000109371	pdgfaa	22: 26085343 ~ 26100282 (-)
ENSDARG00000103379	pax6a	25: 15029041 ~ 15049781 (-)
ENSDARG00000010270	fezf1	25: 28272908 ~ 28276091 (+)
ENSDARG00000063905	mt-co1	MT: 6425 ~ 7975 (+)
ENSDARG00000063908	mt-co2	MT: 8130 ~ 8820 (+)
--	malat1	--
--	ac024175.4	--
--	ascl1b.1	--
--	mllt4a	--
--	pou2f2a.1	--
--	pvrl3b	--
--	shisa2	--
--	si:ch211-193l2.3	--
--	si:ch211-193l2.4	--
--	si:ch211-193l2.5	--
--	si:ch211-193l2.6	--
--	si:ch211-202e12.3	--
--	si:dkey-153m14.1	--
--	otx2	--
--	si:ch211-132d3.4	--
--	epha2	--
--	ildr2.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Telencephalon.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
GSE106587 (MZoep mutant)	Danio rerio	embryo	2	Telencephalon	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	ENSDARG00000070769 (foxg1a)	marker	DOI:10.1126/science.aar3131
GSE158142 (12hpf)	Danio rerio	head	12	Telencephalon	baseline	12hpf, 6 somites, untreatment	ENSDARG00000070769 (foxg1a)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (12hpf)	Danio rerio	head	12	Telencephalon	baseline	12hpf, 6 somites, untreatment	ENSDARG00000022531 (ntn1b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	3	Telencephalon	baseline	18hpf, 18 somites, untreatment	ENSDARG00000031222 (lhx2b)	marker	DOI:10.1016/j.neuron.2020.09.023
GSE158142 (18hpf)	Danio rerio	head	3	Telencephalon	baseline	18hpf, 18 somites, untreatment	ENSDARG00000070769 (foxg1a)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Telencephalon

Distribution of Telencephalon in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences