Fish Single-cell RNA Database

GENE ID: ENSDARG00000109371

Symbol	Location	Gene type	Genome version	Species
pdgfaa	22: 26085343 ~ 26100282 (-)	protein_coding	GRCz11	Danio rerio

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.
Click on the transcript to obtain the sequence.

PPI (protein-protein interaction) results are shown above.

Green is ENSDARG00000109371 (pdgfaa), yellow represents other genes.

Hover over the node can see the symbol/gene ID it represents.

The more connections, the bigger symbol size.

Gene ID	Symbol	Location
ENSDARG00000062909	furina	7: 13988075 ~ 14207006 (+)
ENSDARG00000028663	tek	5: 480119 ~ 496781 (+)
ENSDARG00000038139	pdgfbb	3: 24275597 ~ 24297419 (+)
ENSDARG00000040118	zgc:113232	16: 38360002 ~ 38389883 (+)
ENSDARG00000070494	pdgfra	20: 22435180 ~ 22476255 (-)
ENSDARG00000077588	pdgfc	14: 35567321 ~ 35853647 (-)
ENSDARG00000052739	egf	14: 36279826 ~ 36325558 (-)
ENSDARG00000105215	kdrl	14: 32983769 ~ 33044955 (-)
ENSDARG00000100897	pdgfrb	14: 3186485 ~ 3268155 (-)
ENSDARG00000057408	CABZ01067232.1	15: 45668851 ~ 45674213 (-)
ENSDARG00000077677	pdgfd	15: 44929497 ~ 44995151 (+)
ENSDARG00000053624	csf1rb	21: 43854594 ~ 43877428 (+)
ENSDARG00000044276	spp1	10: 15120711 ~ 15128771 (-)
ENSDARG00000019371	flt1	24: 21750810 ~ 21808819 (-)
ENSDARG00000086778	pdgfba	22: 29312228 ~ 29336309 (-)
ENSDARG00000109371	pdgfaa	22: 26085343 ~ 26100282 (-)

MARKER

The figure above shows the marker information in datasets of Danio rerio.
: marker.
: potential marker.
Click the legend to hide the icon of the cell type, which can be used in the case of overlapping icons.

EXPRESSION

	Dataset ID	Tissue / Organ	Experiment type	Sample	Cell type	Marker class	Evidence
	GSE173972 (HET, ezh1+\|-)	embryo	hematopoietic	1.25dpf, Kdrl-positive embryos	Epithelial cells (cluster: 4)	potential marker	NA
	GSE106587 (MZoep mutant)	embryo	baseline	12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo	Telencephalon (cluster: 2)	potential marker	NA
	GSE126647 (control)	embryo	baseline	1.17dpf, control nkx2.5:ZsYellow+ cells	Less-differentiated SHFPs (cluster: 4)	potential marker	NA
	GSE126647 (Pbx4-depleted)	embryo	growth	1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells	Less-differentiated SHFPs (cluster: 5) Proliferative SHFPs (cluster: 9)	potential marker potential marker	NA NA
	PRJNA564810 (5dpf)	embryo	baseline	5dpf, a single-cell transcriptome atlas for zebrafish development	Enteric smooth muscle (cluster: 23)	potential marker	NA
	GSE158142 (12hpf)	head	baseline	12hpf, 6 somites, untreatment	Optic vesicle (cluster: 3)	potential marker	NA
	GSE158142 (1.5dpf)	head	baseline	1.5dpf, untreatment	Epidermal cells (cluster: 10)	potential marker	NA
	GSE122680 (24hpf)	retina	baseline	24hpf, WT, untreatment	Muller glia cells (cluster: 5)	potential marker	NA
	GSE122680 (1.5dpf)	retina	baseline	1.5dpf, WT, untreatment	Muller glia cells (cluster: 10)	potential marker	NA
	GSE122680 (3dpf)	retina	baseline	3dpf, WT, untreatment	Muller glia cells (cluster: 9)	potential marker	NA
	GSE176129 (pdgfrb-positive)	whole body	baseline	5dpf, FACS-isolated pdgfrb-positive cells	Smooth muscle cells (cluster: 11)	potential marker	NA
	PRJNA415636 (brain)	brain	baseline	adult, Zebrabow M, brain
	PRJNA554650 (6.5dpf)	brain	baseline	6.5dpf, whole brain of nr1d1:VNP fish