Fish Single-cell RNA Database

CELL TYPE: Otic

Distribution of Otic in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000016691	cd9b	4: 4234994 ~ 4261673 (-)
ENSDARG00000045898	si:ch211-152c2.3	4: 842010 ~ 845033 (+)
ENSDARG00000016526	gata3	4: 25054510 ~ 25064510 (-)
ENSDARG00000006060	crybg1b	4: 861444 ~ 890220 (-)
ENSDARG00000107526	smkr1	4: 4232562 ~ 4233275 (+)
ENSDARG00000105641	si:ch211-98n17.5	7: 34256520 ~ 34265481 (-)
ENSDARG00000003193	rassf7b	7: 49654588 ~ 49692001 (+)
ENSDARG00000024116	vamp8	5: 28271412 ~ 28279364 (+)
ENSDARG00000017320	f11r.1	5: 29831195 ~ 29848772 (+)
ENSDARG00000094561	si:ch211-139a5.9	5: 37884022 ~ 37886077 (-)
ENSDARG00000027345	mpzl2b	5: 37948283 ~ 37963763 (-)
ENSDARG00000020364	fbp1b	5: 35458190 ~ 35462126 (+)
ENSDARG00000058605	vsig10	5: 12562188 ~ 12587053 (-)
ENSDARG00000101901	zgc:193711	5: 57619943 ~ 57624425 (-)
ENSDARG00000089749	aqp8b	3: 18572279 ~ 18575868 (-)
ENSDARG00000087193	prrg2	3: 32416948 ~ 32424303 (+)
ENSDARG00000027196	si:dkey-16l2.17	3: 32689707 ~ 32696592 (+)
ENSDARG00000070047	rgs4	6: 35362225 ~ 35366944 (+)
ENSDARG00000052705	pkp1b	6: 54711306 ~ 54754042 (+)
ENSDARG00000052099	agxta	6: 27112884 ~ 27123327 (-)
ENSDARG00000096454	ap1m2	6: 112579 ~ 119859 (+)
ENSDARG00000097193	si:dkey-28n18.9	6: 40422224 ~ 40429414 (-)
ENSDARG00000020929	fam49ba	2: 32215272 ~ 32262287 (-)
ENSDARG00000011166	cahz	2: 29477383 ~ 29485408 (-)
ENSDARG00000099960	elovl1a	2: 19163965 ~ 19215112 (+)
ENSDARG00000040306	otomp	2: 41504752 ~ 41518340 (-)
ENSDARG00000103929	ildr1a	1: 44839 ~ 50247 (-)
ENSDARG00000005525	acy3.2	1: 52489962 ~ 52498146 (-)
ENSDARG00000001870	atp1a1a.4	1: 1689775 ~ 1706159 (+)
ENSDARG00000031952	mb	1: 55137943 ~ 55145085 (+)
ENSDARG00000037455	ugt8	1: 20556067 ~ 20593778 (-)
ENSDARG00000022261	pdzk1	9: 5862040 ~ 5892075 (+)
ENSDARG00000041051	mid1ip1a	9: 30263188 ~ 30264415 (-)
ENSDARG00000027609	hpn	16: 45249055 ~ 45288599 (-)
ENSDARG00000005112	cdh17	16: 26774182 ~ 26802798 (+)
ENSDARG00000073799	zgc:194210	16: 31428488 ~ 31435020 (-)
ENSDARG00000015866	apoa2	16: 23978978 ~ 23980354 (+)
ENSDARG00000009133	myo1eb	16: 38201840 ~ 38238909 (+)
ENSDARG00000056331	ahcyl1	8: 24971890 ~ 25011157 (-)
ENSDARG00000059227	fabp1b.1	8: 999421 ~ 1006174 (+)
ENSDARG00000068409	vgll4l	8: 31099264 ~ 31107537 (-)
ENSDARG00000093549	selenop	8: 31435452 ~ 31443334 (+)
ENSDARG00000069093	col2a1a	8: 21195420 ~ 21219473 (+)
ENSDARG00000059247	tmem54a	17: 25326054 ~ 25342274 (+)
ENSDARG00000020944	ezra	17: 45413324 ~ 45452116 (+)
ENSDARG00000102332	spint1a	17: 1998041 ~ 2039511 (-)
ENSDARG00000031929	stard14	14: 33270387 ~ 33278084 (-)
ENSDARG00000056627	cxcl14	14: 24400799 ~ 24410673 (-)
ENSDARG00000071585	stard15	14: 26546175 ~ 26562231 (+)
ENSDARG00000037307	gnpda1	14: 23709134 ~ 23715349 (+)
ENSDARG00000004115	mgat4b	14: 16483926 ~ 16754262 (-)
ENSDARG00000012972	cfl1l	13: 33606739 ~ 33609427 (+)
ENSDARG00000040534	epcam	13: 8840772 ~ 8843363 (+)
ENSDARG00000031483	col9a1b	13: 39119460 ~ 39160018 (-)
ENSDARG00000028148	pax2a	13: 29770837 ~ 29805529 (+)
ENSDARG00000002197	pygl	13: 36846789 ~ 36863039 (-)
ENSDARG00000088709	tnfaip8l3	18: 39522468 ~ 39583601 (-)
ENSDARG00000061173	st14a	18: 44532199 ~ 44566188 (+)
ENSDARG00000056247	bricd5	12: 18551597 ~ 18560500 (-)
ENSDARG00000040513	zgc:92313	12: 4241458 ~ 4249000 (-)
ENSDARG00000070480	agr2	19: 30400372 ~ 30404096 (-)
ENSDARG00000032849	ndrg1a	19: 34959967 ~ 34979837 (-)
ENSDARG00000035882	rida	19: 32822269 ~ 32884513 (+)
ENSDARG00000078522	si:ch211-80h18.1	19: 3086851 ~ 3127290 (-)
ENSDARG00000024492	col9a2	19: 38422059 ~ 38467554 (+)
ENSDARG00000035694	stm	19: 3137518 ~ 3167878 (-)
ENSDARG00000092099	si:ch211-133n4.6	19: 3186669 ~ 3193912 (-)
ENSDARG00000043128	cldne	15: 2638884 ~ 2640966 (-)
ENSDARG00000069888	cldna	15: 2655566 ~ 2657508 (-)
ENSDARG00000069476	spint2	15: 20239141 ~ 20250516 (+)
ENSDARG00000103117	tmprss4a	15: 12429206 ~ 12459335 (+)
ENSDARG00000013598	tnfb	15: 34699585 ~ 34702661 (+)
ENSDARG00000099291	lsr	15: 33937756 ~ 33965440 (-)
ENSDARG00000037845	col9a3	23: 495514 ~ 524780 (-)
ENSDARG00000088040	si:dkeyp-27c8.2	23: 40755764 ~ 40766518 (-)
ENSDARG00000095453	si:rp71-17i16.6	23: 20340200 ~ 20345473 (-)
ENSDARG00000006603	csrp1a	23: 5765514 ~ 5818992 (-)
ENSDARG00000058371	krt5	23: 10173196 ~ 10177458 (-)
ENSDARG00000003219	bin2a	23: 33739215 ~ 33753361 (-)
ENSDARG00000069503	cldnh	21: 25739295 ~ 25741411 (-)
ENSDARG00000015955	cldnc	21: 25754268 ~ 25756119 (-)
ENSDARG00000009544	cldnb	21: 25765734 ~ 25766840 (+)
ENSDARG00000009215	zgc:112437	21: 25773530 ~ 25774605 (-)
ENSDARG00000070844	gamt	11: 5855923 ~ 5865744 (-)
ENSDARG00000014047	cldn7b	10: 22144768 ~ 22150419 (-)
ENSDARG00000005108	oclna	10: 2924775 ~ 2943474 (-)
ENSDARG00000044261	si:ch211-243g18.2	10: 9550419 ~ 9571012 (+)
ENSDARG00000101986	irf6	22: 1170294 ~ 1182165 (+)
ENSDARG00000002909	tjp3	22: 17657612 ~ 17688873 (-)
ENSDARG00000077982	elf3	22: 661505 ~ 665371 (+)
ENSDARG00000007421	ftcd	22: 12770877 ~ 12786532 (+)
ENSDARG00000015123	dnase1l4.1	22: 5667371 ~ 5682494 (-)
ENSDARG00000043242	si:dkey-222f2.1	22: 5727753 ~ 5739360 (+)
--	afp4.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Otic.

Detail Marker Information in Datasets

Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
PRJNA640816 (2dpf)	Danio rerio	embryo	10	Otic	baseline	2dpf, FACS isolated -4.9sox10:EGFP+ cells	ENSDARG00000009544 (cldnb)	marker	DOI:10.7554/eLife.60005
PRJNA564810 (1dpf)	Danio rerio	embryo	20	Otic	baseline	1dpf, a single-cell transcriptome atlas for zebrafish development	ENSDARG00000001870 (atp1a1a.4)	marker	DOI:10.1093/g3journal/jkac062
GSE163907 (24hpf)	Danio rerio	trunk	7	Otic	baseline	24hpf, trunk tg(sox10:GFP) positive cells	ENSDARG00000040534 (epcam)	marker	DOI:10.7554/eLife.66078

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Otic

Distribution of Otic in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences