Symbol | Location | Gene type | Genome version | Species |
---|---|---|---|---|
cldn7b | 10: 22144768 ~ 22150419 (-) | protein_coding | GRCz11 | Danio rerio |
Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
---|---|---|---|---|---|---|---|
PRJNA415636 (primary pancreatic islet) | primary pancreatic islet | baseline | adult, Zebrabow M, primary pancreatic islet |
Pancreas duct epithelial cells (cluster: 7) |
marker |
DOI:10.1038/nbt.4124 |
|
PRJNA554650 (6.5dpf) | brain | baseline | 6.5dpf, whole brain of nr1d1:VNP fish |
Endothelium (cluster: 17) Microglia (cluster: 18) Cranial ganglion (cluster: 22) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment |
Eye (cluster: 13) |
potential marker |
NA |
|
GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment |
Eye (cluster: 17) |
potential marker |
NA |
|
PRJNA610520 (3.5dpf) | caudal hematopoietic tissue | baseline | 3.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 12) |
potential marker |
NA |
|
PRJNA610520 (4.5dpf) | caudal hematopoietic tissue | baseline | 4.5dpf, the mixture of same amount of kdrl:mCherry+ cells, CD41:GFP+ cells and double negative cells. |
Epithelial cells (cluster: 15) |
potential marker |
NA |
|
GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Epidermal cells (cluster: 12) Periderm cells (cluster: 16) Immune cells (cluster: 20) Epidermal cells (cluster: 5) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Epidermal cells (cluster: 7) |
potential marker |
NA |
|
GSE173972 (WT, ezh1+|+) | embryo | baseline | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE173972 (HET, ezh1+|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE173972 (KO, ezh1-|-) | embryo | hematopoietic | 1.25dpf, Kdrl-positive embryos |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE158849 (labeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (labeled) |
Enveloping layer cells (cluster: 7) |
potential marker |
NA |
|
GSE158849 (unlabeled) | embryo | baseline | 6hpf, WT, 4sUTP injected (unlabeled) | ||||
GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo |
Epidermal cells (cluster: 4) |
potential marker |
NA |
|
GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo |
EVL, Periderm (cluster: 3) Epidermal cells (cluster: 8) Placode (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
SHFP (cluster: 10) |
potential marker |
NA |
|
PRJNA640816 (2dpf) | embryo | baseline | 2dpf, FACS isolated -4.9sox10:EGFP+ cells |
Otic (cluster: 10) |
potential marker |
NA |
|
PRJNA706197 (20hpf) | embryo | baseline | 20hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
PRJNA706197 (24hpf) | embryo | baseline | 24hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 2) |
potential marker |
NA |
|
PRJNA706197 (18hpf) | embryo | baseline | 18hpf, FACS sorted sox10:nEOS cells |
Epithelial cells (cluster: 2) |
potential marker |
NA |
|
PRJNA564810 (5dpf) | embryo | baseline | 5dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 13) Periderm cells (cluster: 4) Epidermal cells (cluster: 9) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA564810 (2dpf) | embryo | baseline | 2dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 13) Epidermal cells (cluster: 15) Epidermal cells (cluster: 16) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA564810 (1dpf) | embryo | baseline | 1dpf, a single-cell transcriptome atlas for zebrafish development |
Epidermal cells (cluster: 12) Epidermal cells (cluster: 14) Epidermal cells (cluster: 22) Mucous secreting cells (cluster: 24) Integument Ionocyte (cluster: 27) |
potential marker potential marker potential marker potential marker potential marker |
NA NA NA NA NA |
|
GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Epidermal cells (cluster: 10) Placode (cluster: 11) Placode (cluster: 6) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment |
Epidermal cells (cluster: 6) |
potential marker |
NA |
|
GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Pharyngeal endoderm (cluster: 10) Epidermal cells (cluster: 12) Placode (cluster: 13) Placode (cluster: 5) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Epidermal cells (cluster: 11) Epidermal cells (cluster: 12) Placode (cluster: 4) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment |
Periderm cells (cluster: 11) Epidermal cells (cluster: 3) |
potential marker potential marker |
NA NA |
|
GSE158142 (24hpf) | head | baseline | 24hpf, untreatment |
Epidermal cells (cluster: 5) Epidermal cells (cluster: 7) Periderm cells (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment |
Epidermal cells (cluster: 10) |
potential marker |
NA |
|
GSE158142 (2dpf) | head | baseline | 2dpf, untreatment |
Epidermal cells (cluster: 5) |
potential marker |
NA |
|
GSE158142 (3dpf) | head | baseline | 3dpf, untreatment |
Periderm cells (cluster: 9) |
potential marker |
NA |
|
PRJNA415636 (pancreas, liver) | hepatopancreas | baseline | adult, Zebrabow M, pancreas and liver |
Pancreas duct epithelial cells (cluster: 7) |
potential marker |
NA |
|
PRJNA754013 (zebrafish) | hypothalamus | baseline | adult, male, female, untreatment |
Endothelium (cluster: 9) |
potential marker |
NA |
|
GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl |
Epithelial cells (cluster: 5) |
potential marker |
NA |
|
GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC | ||||
PRJNA605021 (supporting cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae |
Support cells (cluster: 2) Support cells (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA605021 (hair cells) | neuromast | baseline | 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[myo6b:actb1-EGFP] transgenic zebrafish larvae |
Support cells (cluster: 4) |
potential marker |
NA |
|
PRJNA668529 (3d) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 days |
Neuronal progenitor (cluster: 4) Endothelium (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA668529 (3h) | olfactory rosette | disease | 3mpf, intranasal 100ng r-Spike 3 hours |
Endothelium (cluster: 3) Endothelium (cluster: 7) |
potential marker potential marker |
NA NA |
|
PRJNA668529 (control) | olfactory rosette | baseline | 3mpf, intranasal PBS |
Endothelium (cluster: 7) |
potential marker |
NA |
|
GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Amacrine cells (cluster: 7) |
potential marker |
NA |
|
PRJNA551501 (2mpf) | thyroid gland | baseline | 2mpf, Tg(tg:mVenus-T2A-NTR) |
Gills (cluster: 13) Non-follicular epithelium (cluster: 5) Thyrocytes (cluster: 7) |
potential marker potential marker potential marker |
NA NA NA |
|
PRJNA551501 (8mpf) | thyroid gland | baseline | 8mpf, Tg(tg:mVenus-T2A-NTR) |
Thyrocytes (cluster: 12) Non-follicular epithelium (cluster: 3) Gills (cluster: 8) |
potential marker potential marker potential marker |
NA NA NA |
|
GSE163907 (24hpf) | trunk | baseline | 24hpf, trunk tg(sox10:GFP) positive cells |
Otic (cluster: 7) |
potential marker |
NA |
|
GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone | ||||
GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Epidermal cells (cluster: 14) Epidermal cells (cluster: 29) Neuromast cells (cluster: 32) Periderm cells (cluster: 36) |
potential marker potential marker potential marker potential marker |
NA NA NA NA |
|
GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |
Epithelial cells (cluster: 4) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 8) |
potential marker |
NA |
|
GSE158099 (runx1 -|-) | whole body | hematopoietic | 16dpf, cd41:GFPlow-runx1-/- |
Epidermal cells (cluster: 9) |
potential marker |
NA |
|
PRJNA415636 (brain) | brain | baseline | adult, Zebrabow M, brain | ||||
GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry | ||||
PRJNA656271 (24hpf) | embryo | baseline | 24hpf, FACS-isolated EGFP+ cells | ||||
PRJNA734348 (dome, dnmt1) | embryo | growth | 4.3hpf, dome, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
GSE168695 (5dpf) | embryo | baseline | 5dpf, GFP+ cells isolated from 5 dpf cldnb:lyn-EGFP embryos | ||||
PRJNA656271 (1.5dpf) | embryo | baseline | 1.5dpf, FACS-isolated EGFP+ cells | ||||
PRJNA734348 (shield, control) | embryo | baseline | 6hpf, shield, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) | ||||
PRJNA640816 (2.9dpf) | embryo | baseline | 2.9dpf, FACS isolated -4.9sox10:EGFP+ cells | ||||
PRJNA656271 (2dpf) | embryo | baseline | 2dpf, FACS-isolated EGFP+ cells | ||||
PRJNA734348 (shield, dnmt1) | embryo | growth | 6hpf, shield, oocyte microinjection with Rhodamine B and dnmt1 MO at oogenesis III stage (GV) | ||||
PRJNA706197 (1.25dpf) | embryo | baseline | 1.25dpf, FACS sorted sox10:nEOS cells | ||||
PRJNA734348 (dome, control) | embryo | baseline | 4.3hpf, dome, oocyte microinjection with Rhodamine B and control MO at oogenesis III stage (GV) | ||||
GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells | ||||
PRJNA706197 (14hpf) | embryo | baseline | 14hpf, FACS sorted sox10:nEOS cells | ||||
GSE161712 (M. marinum) | granulomas | disease | adult, infected with bacteria of M. marinum | ||||
PRJNA608912 (wt_2dpi) | heart | regeneration | 5mpf, wild type, 2 days post injury |