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: marker.| Dataset ID | Tissue / Organ | Experiment type | Sample | Cell type | Marker class | Evidence | |
|---|---|---|---|---|---|---|---|
| GSE152982 (wild type) | trunk | baseline | 1.25dpf, untreatment |
Floor plate (cluster: 13) |
marker |
DOI:10.1371/journal.pone.0254024 |
|
| GSE144944 (fgfr3 -|-) | cranial vault | growth | 1mpf, fgfr3 -/- |
Chondrocytes (cluster: 2) |
potential marker |
NA |
|
| GSE144944 (fgfr3 +|+) | cranial vault | baseline | 1mpf, fgfr3 +/+ |
Chondrocytes (cluster: 2) |
potential marker |
NA |
|
| GSE106587 (WT) | embryo | baseline | 12hpf, 6 somites, wild-type TLAB embryo |
Mesoderm (cluster: 9) |
potential marker |
NA |
|
| GSE126647 (control) | embryo | baseline | 1.17dpf, control nkx2.5:ZsYellow+ cells |
Differentiated art.CMs (cluster: 2) |
potential marker |
NA |
|
| GSE126647 (Pbx4-depleted) | embryo | growth | 1.17dpf, Pbx4-depleted nkx2.5:ZsYellow+ cells |
Differentiated art.ventricle (cluster: 4) |
potential marker |
NA |
|
| GSE158142 (12hpf) | head | baseline | 12hpf, 6 somites, untreatment |
Mesoderm (cluster: 7) |
potential marker |
NA |
|
| GSE158142 (14hpf) | head | baseline | 14hpf, 10 somites, untreatment |
Floor plate (cluster: 13) |
potential marker |
NA |
|
| GSE158142 (16hpf) | head | baseline | 16hpf, 14 somites, untreatment |
Mesoderm (cluster: 8) |
potential marker |
NA |
|
| GSE158142 (18hpf) | head | baseline | 18hpf, 18 somites, untreatment |
Mesoderm (cluster: 10) Epidermal cells (cluster: 11) Floor plate (cluster: 16) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE150498 (DSS treated) | intestine | disease | 6dpf, DSS treated |
Chondrocytes (cluster: 13) |
potential marker |
NA |
|
| GSE137784 (HCC, CreLox) | liver | disease | 6mpf, male, isolated from the zebrafish without HCC | ||||
| GSE122680 (24hpf) | retina | baseline | 24hpf, WT, untreatment |
Horizontal cells (cluster: 4) Muller glia cells (cluster: 5) Amacrine cells (cluster: 7) |
potential marker potential marker potential marker |
NA NA NA |
|
| GSE122680 (3dpf) | retina | baseline | 3dpf, WT, untreatment | ||||
| GSE131136 (all) | trunk, skin | baseline | 5dpf, sox10:CRE positive cells from 5dpf and post-embryonic zebrafish trunks with and without thyroid hormone |
Schwann cell precursor (cluster: 2) |
potential marker |
NA |
|
| GSE176129 (pdgfrb-positive) | whole body | baseline | 5dpf, FACS-isolated pdgfrb-positive cells |
Chondrocytes (cluster: 16) |
potential marker |
NA |
|
| GSE158099 (WT) | whole body | baseline | 2.5dpf, cd41:GFPlow-WT |
Chondrocytes (cluster: 3) |
potential marker |
NA |
|
| GSE158142 (5dpf) | brain, eye | baseline | 5dpf, untreatment | ||||
| GSE158142 (8dpf) | brain, eye | baseline | 8dpf, untreatment | ||||
| GSE158142 (15dpf) | brain, eye | baseline | 15dpf, untreatment | ||||
| GSE151354 (wild type) | cartilage | baseline | 21dpf, wild type | ||||
| GSE151354 (nkx3.2 mutant) | cartilage | growth | 21dpf, nkx3.2 mutant | ||||
| GSE130526 (fin) | dorsal and anal fin | baseline | adult, fins were amputated from fish expressing both pnp4a:palmmCherry and tyrp1b:palmmCherry | ||||
| GSE106587 (MZoep mutant) | embryo | baseline | 12hpf, 6 somites, maternal zygotic oep tz57 mutant embryo | ||||
| GSE158142 (1.5dpf) | head | baseline | 1.5dpf, untreatment | ||||
| GSE158142 (2dpf) | head | baseline | 2dpf, untreatment | ||||
| GSE158142 (20hpf) | head | baseline | 20hpf, 21-22 somites, untreatment | ||||
| GSE158142 (3dpf) | head | baseline | 3dpf, untreatment | ||||
| GSE158142 (24hpf) | head | baseline | 24hpf, untreatment | ||||
| GSE150498 (nod2-|-, 1X DSS) | intestine | disease | 6dpf, nod2-/-, 1X DSS | ||||
| GSE150498 (untreated ctrl) | intestine | baseline | 6dpf, untreated ctrl | ||||
| GSE150498 (wildtype, 2X DSS+BZA) | intestine | disease | 6dpf, wildtype, 2X DSS+BZA | ||||
| GSE150498 (nod2-|-, 2X DSS+BZA) | intestine | disease | 6dpf, nod2-/-, 2X DSS+BZA | ||||
| GSE150498 (wildtype, 1X DSS) | intestine | disease | 6dpf, wildtype, 1X DSS | ||||
| GSE137784 (no HCC) | liver | baseline | 6mpf, male, isolated from the CreLox zebrafish with HCC | ||||
| GSE137784 (HCC, HepABC) | liver | disease | 6mpf, male, isolated from the Tg(fabp10a:pt-B-cat)(HepABC) zebrafish with HCC | ||||
| GSE123241 (wild type) | neuromast | baseline | 5dpf, wild type during sensory hair cell regeneration, lateral line sensory | ||||
| GSE123241 (fgf3 mutants) | neuromast | regeneration | 5dpf, fgf3 mutants during sensory hair cell regeneration, lateral line sensory | ||||
| GSE123241 (fgf3 siblings) | neuromast | regeneration | 5dpf, fgf3 siblings during sensory hair cell regeneration, lateral line sensory | ||||
| GSE148591 (6mpf) | pituitary | baseline | 6mpf, male, Sox17:CreERT2 | ||||
| GSE148591 (3mpf) | pituitary | transplant | 3mpf, graft transplantation during early embryogenesis | ||||
| GSE122680 (2dpf) | retina | baseline | 2dpf, WT, untreatment | ||||
| GSE122680 (1.5dpf) | retina | baseline | 1.5dpf, WT, untreatment | ||||
| GSE175929 (5mpf) | retina | baseline | 5mpf, GFP-positive cells collected from two transgenic zebrafish, Tg(rho:EGFP)ja2Tg and Tg(gnat2:EGFP)ja23Tg | ||||
| GSE122680 (14dpf) | retina | baseline | 14dpf, WT, untreatment | ||||
| GSE159709 (melanoma) | tumor | disease | adult, equal numbers of sorted GFP+ (tumor) and GFP- (macroenvironment) cells | ||||
| GSE158099 (runx1 -|-) | whole body | hematopoietic | 2.5dpf, cd41:GFPlow-runx1-/- |