Fish Single-cell RNA Database

CELL TYPE: Optic Tectum Gaba+++

Distribution of Optic Tectum Gaba+++ in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000030694	atp6v1e1b	4: 5240126 ~ 5247335 (-)
ENSDARG00000027249	btg1	4: 16536173 ~ 16545085 (-)
ENSDARG00000019644	ldhba	4: 16828752 ~ 16836006 (-)
ENSDARG00000089877	NA	7: 24485048 ~ 24491897 (-)
ENSDARG00000102051	mtbl	7: 29148714 ~ 29149228 (+)
ENSDARG00000105529	vgf	7: 26224211 ~ 26230166 (+)
ENSDARG00000022315	atp6v1g1	5: 57320113 ~ 57325557 (+)
ENSDARG00000007654	nsfa	3: 34766989 ~ 34801041 (-)
ENSDARG00000032619	tob1a	3: 18185616 ~ 18189283 (-)
ENSDARG00000044562	cycsb	6: 10910589 ~ 10912424 (-)
ENSDARG00000027419	gad1b	6: 3827751 ~ 3863452 (+)
ENSDARG00000038577	cox6c	6: 52235441 ~ 52241529 (+)
ENSDARG00000059775	slc32a1	6: 60142619 ~ 60147517 (-)
ENSDARG00000038574	scg2b	2: 47581997 ~ 47585197 (+)
ENSDARG00000076833	atp1b1b	1: 10720294 ~ 10739221 (+)
ENSDARG00000070266	spock3	1: 20635190 ~ 20706296 (+)
ENSDARG00000040988	tpi1b	16: 12236339 ~ 12254994 (+)
ENSDARG00000033655	stmn1b	16: 34523515 ~ 34527206 (+)
ENSDARG00000039914	gapdhs	16: 45044642 ~ 45069882 (-)
ENSDARG00000111235	nrsn1	16: 221739 ~ 229482 (+)
ENSDARG00000043257	ckbb	20: 20816747 ~ 20821789 (-)
ENSDARG00000020609	snap25a	20: 34913069 ~ 34956230 (+)
ENSDARG00000031683	fosab	20: 46552311 ~ 46554440 (-)
ENSDARG00000045639	elavl4	8: 16004154 ~ 16117112 (+)
ENSDARG00000100020	pim1	8: 10304981 ~ 10308771 (+)
ENSDARG00000058117	snap25b	17: 12297984 ~ 12389259 (-)
ENSDARG00000055752	npas4a	14: 30636955 ~ 30642819 (-)
ENSDARG00000092970	tmsb2	14: 34486629 ~ 34488993 (+)
ENSDARG00000099730	pkma	18: 907266 ~ 951570 (+)
ENSDARG00000018259	atp1a3a	19: 6328234 ~ 6385594 (-)
ENSDARG00000013295	slc2a3a	19: 9685165 ~ 9712530 (-)
ENSDARG00000077045	scg5	19: 47523730 ~ 47527192 (-)
ENSDARG00000035715	marcksl1b	19: 29798064 ~ 29800812 (+)
ENSDARG00000071658	ywhag2	15: 15348490 ~ 15357178 (-)
ENSDARG00000069790	dynll2a	15: 16066091 ~ 16070731 (-)
ENSDARG00000045944	slc6a1a	23: 4834447 ~ 4855122 (-)
ENSDARG00000099203	atp1b2a	23: 44732863 ~ 44763861 (+)
ENSDARG00000031317	ppdpfb	23: 17427838 ~ 17429775 (-)
ENSDARG00000022456	eno1a	23: 22656477 ~ 22678882 (+)
ENSDARG00000004187	zgc:122979	21: 5169154 ~ 5174054 (+)
ENSDARG00000019702	aldocb	21: 39608637 ~ 39639954 (-)
ENSDARG00000054191	pgk1	21: 37445871 ~ 37463555 (+)
ENSDARG00000070083	atp5f1b	11: 13207898 ~ 13213059 (+)
ENSDARG00000027744	gadd45ba	11: 6456146 ~ 6457748 (+)
ENSDARG00000039647	slc6a1b	11: 997100 ~ 1024483 (-)
ENSDARG00000056877	vamp2	10: 22838364 ~ 22845485 (-)
ENSDARG00000104458	rnasekb	10: 22916113 ~ 22918214 (-)
ENSDARG00000086665	si:dkey-175g6.2	10: 23022263 ~ 23026529 (+)
ENSDARG00000043465	atp6v1b2	10: 19554604 ~ 19566474 (+)
ENSDARG00000036577	atp6v0cb	24: 39158283 ~ 39175750 (+)
ENSDARG00000045230	cox6b1	24: 39606053 ~ 39610585 (-)
ENSDARG00000015537	gad2	24: 6133147 ~ 6158933 (-)
ENSDARG00000019930	tal1	22: 16535575 ~ 16545330 (+)
ENSDARG00000008735	atp6ap2	22: 11123487 ~ 11137268 (-)
ENSDARG00000003655	tmem59l	22: 21128113 ~ 21150845 (-)
ENSDARG00000059057	atpv0e2	22: 34701848 ~ 34707460 (+)
ENSDARG00000012987	gpia	25: 35913614 ~ 35938996 (+)

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Optic Tectum Gaba+++.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	PRJNA554650 (6.5dpf)	Danio rerio	brain	2	Optic Tectum Gaba+++	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000015537 (gad2)	marker	DOI:10.1038/nbt.4103

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Optic Tectum Gaba+++

Distribution of Optic Tectum Gaba+++ in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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