Fish Single-cell RNA Database

CELL TYPE: Optic stalk (ventral diencephalon)

Distribution of Optic stalk (ventral diencephalon) in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000011582	sox5	4: 16982249 ~ 17055950 (-)
ENSDARG00000036036	mdka	7: 39166460 ~ 39178198 (+)
ENSDARG00000010770	sox19a	5: 24199180 ~ 24201437 (-)
ENSDARG00000008131	sox1b	1: 46194333 ~ 46196107 (+)
ENSDARG00000099572	hmgn2	16: 51180938 ~ 51184126 (+)
ENSDARG00000017107	nr2e1	20: 32437396 ~ 32446406 (-)
ENSDARG00000043531	jun	20: 15552657 ~ 15554606 (+)
ENSDARG00000031222	lhx2b	8: 3085120 ~ 3101392 (+)
ENSDARG00000043716	cldn5a	8: 4697764 ~ 4699320 (+)
ENSDARG00000077811	sox11a	17: 35878544 ~ 35881841 (-)
ENSDARG00000070769	foxg1a	17: 29117027 ~ 29119362 (-)
ENSDARG00000053569	sox3	14: 32742701 ~ 32744464 (-)
ENSDARG00000020417	emx3	14: 26363537 ~ 26377044 (-)
ENSDARG00000058008	six3a	13: 10258007 ~ 10261383 (-)
ENSDARG00000054879	six3b	12: 25600685 ~ 25603341 (+)
ENSDARG00000020946	auts2b	15: 20004766 ~ 20024205 (-)
ENSDARG00000017673	nova2	15: 28685625 ~ 28766824 (+)
ENSDARG00000056732	her4.1	23: 21452557 ~ 21453614 (-)
ENSDARG00000057936	lhx5	21: 15913128 ~ 15929041 (-)
ENSDARG00000070677	fezf2	11: 20056732 ~ 20059407 (+)
ENSDARG00000030297	sox13	11: 37768298 ~ 37831776 (+)
ENSDARG00000075625	lrig1	11: 16329776 ~ 16395956 (-)
ENSDARG00000076532	si:ch211-222l21.1	11: 40677616 ~ 40696136 (-)
ENSDARG00000054560	her15.2	11: 41994287 ~ 41996957 (-)
ENSDARG00000038205	her2	11: 41966117 ~ 41966854 (-)
ENSDARG00000054562	her15.1	11: 41981959 ~ 41984487 (+)
ENSDARG00000034013	rgmd	22: 19640309 ~ 19646421 (+)
--	si:ch211-193l2.3	--
--	si:ch211-193l2.4	--
--	si:ch211-193l2.5	--
--	si:ch211-193l2.6	--
--	si:ch211-132d3.4	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Optic stalk (ventral diencephalon).

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE158142 (14hpf)	Danio rerio	head	5	Optic stalk (ventral diencephalon)	baseline	14hpf, 10 somites, untreatment	ENSDARG00000008131 (sox1b)	marker	DOI:10.1016/j.neuron.2020.09.023
	GSE158142 (14hpf)	Danio rerio	head	5	Optic stalk (ventral diencephalon)	baseline	14hpf, 10 somites, untreatment	ENSDARG00000070677 (fezf2)	marker	DOI:10.1016/j.neuron.2020.09.023

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Optic stalk (ventral diencephalon)

Distribution of Optic stalk (ventral diencephalon) in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

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