Fish Single-cell RNA Database

CELL TYPE: Pallium (Glut+)

Distribution of Pallium (Glut+) in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000027249	btg1	4: 16536173 ~ 16545085 (-)
ENSDARG00000019396	rergla	4: 12381735 ~ 12388535 (-)
ENSDARG00000002131	celf2	4: 23886726 ~ 24031924 (-)
ENSDARG00000030614	syt1a	4: 21129752 ~ 21315399 (+)
ENSDARG00000062797	nell2b	4: 14247693 ~ 14328997 (-)
ENSDARG00000035942	hrh3	7: 41748693 ~ 41753237 (+)
ENSDARG00000069425	hsbp1a	7: 26629084 ~ 26634061 (+)
ENSDARG00000095908	sat1a.2	5: 4366431 ~ 4374375 (+)
ENSDARG00000101759	homer1b	5: 51774983 ~ 51830997 (-)
ENSDARG00000093313	ubb	5: 42092227 ~ 42096331 (+)
ENSDARG00000018270	olfm1a	5: 64732036 ~ 64775757 (+)
ENSDARG00000039626	nrgna	5: 58372164 ~ 58382655 (+)
ENSDARG00000003281	pik3ip1	5: 20866572 ~ 20879527 (-)
ENSDARG00000052222	rasd2	3: 50175166 ~ 50177658 (-)
ENSDARG00000023771	gabrb3	6: 38381957 ~ 38513578 (+)
ENSDARG00000012555	ak5	2: 8845840 ~ 9059955 (-)
ENSDARG00000038574	scg2b	2: 47581997 ~ 47585197 (+)
ENSDARG00000053358	basp1	2: 42724404 ~ 42748657 (+)
ENSDARG00000038978	dnajb4	2: 9552456 ~ 9560307 (+)
ENSDARG00000027740	adcyap1b	2: 31296644 ~ 31302619 (-)
ENSDARG00000039650	itm2cb	2: 48284464 ~ 48298985 (-)
ENSDARG00000020794	neurod6b	2: 50608099 ~ 50629155 (+)
ENSDARG00000004621	gpm6ab	1: 38649141 ~ 38756904 (-)
ENSDARG00000093064	NA	1: 22857753 ~ 22861348 (-)
ENSDARG00000074378	junba	1: 51732979 ~ 51734535 (-)
ENSDARG00000052012	rtn4rl2a	1: 44491077 ~ 44495902 (+)
ENSDARG00000019566	neurod1	9: 44291721 ~ 44295071 (-)
ENSDARG00000004712	tbr1b	9: 51427826 ~ 51436377 (-)
ENSDARG00000040287	ywhabl	16: 24681177 ~ 24695891 (+)
ENSDARG00000033234	stmn2a	16: 16165029 ~ 16182319 (-)
ENSDARG00000055115	dtnbp1a	16: 25504109 ~ 25535430 (-)
ENSDARG00000111235	nrsn1	16: 221739 ~ 229482 (+)
ENSDARG00000043673	si:dkey-174m14.3	20: 9355912 ~ 9421263 (+)
ENSDARG00000008829	chga	20: 27020201 ~ 27045991 (+)
ENSDARG00000089156	egr3	8: 50727220 ~ 50733508 (+)
ENSDARG00000058454	dynll1	8: 2487250 ~ 2491471 (+)
ENSDARG00000002230	sypb	8: 49403668 ~ 49432061 (-)
ENSDARG00000076170	pcsk1nl	8: 7359294 ~ 7379391 (+)
ENSDARG00000013843	sept5a	8: 4588398 ~ 4618653 (-)
ENSDARG00000098108	dusp2	8: 40628926 ~ 40633991 (+)
ENSDARG00000021811	calm1a	17: 26713111 ~ 26721007 (-)
ENSDARG00000053475	ngb	17: 44961908 ~ 44968407 (-)
ENSDARG00000044098	egr2a	17: 43663504 ~ 43677471 (-)
ENSDARG00000023323	ywhaqb	17: 32374876 ~ 32527320 (+)
ENSDARG00000052765	gria2b	14: 35748206 ~ 35813662 (+)
ENSDARG00000037495	rtn4rl2b	14: 17197132 ~ 17200874 (+)
ENSDARG00000104945	sncb	14: 50770537 ~ 50804016 (+)
ENSDARG00000039123	trim9	13: 36868365 ~ 36911118 (-)
ENSDARG00000028228	zbtb18	13: 11436130 ~ 11445034 (+)
ENSDARG00000007825	map2k1	18: 19419120 ~ 19451165 (+)
ENSDARG00000030078	glipr1b	18: 7345417 ~ 7355225 (+)
ENSDARG00000007753	cpne2	18: 17660158 ~ 17704546 (+)
ENSDARG00000042826	egr2b	12: 8483838 ~ 8504278 (-)
ENSDARG00000061647	nrxn1a	12: 24342303 ~ 24640339 (+)
ENSDARG00000019274	rasd1	12: 1398404 ~ 1400009 (+)
ENSDARG00000057913	syt11a	19: 23982466 ~ 24034710 (+)
ENSDARG00000071026	mllt11	19: 7445644 ~ 7450796 (-)
ENSDARG00000070705	zgc:64022	19: 24123409 ~ 24125457 (-)
ENSDARG00000033182	arl4ab	19: 31339305 ~ 31341850 (-)
ENSDARG00000006640	eomesa	19: 860830 ~ 874888 (-)
ENSDARG00000100825	calm3a	15: 9234052 ~ 9272328 (-)
ENSDARG00000070222	fam43b	23: 37323962 ~ 37325961 (+)
ENSDARG00000077799	egr4	23: 45579497 ~ 45581626 (+)
ENSDARG00000014053	olfm1b	21: 6751405 ~ 6813561 (+)
ENSDARG00000004187	zgc:122979	21: 5169154 ~ 5174054 (+)
ENSDARG00000104782	oaz1b	21: 723998 ~ 735587 (+)
ENSDARG00000074057	calm3b	21: 26726936 ~ 26732085 (+)
ENSDARG00000079161	bsnb	11: 37431693 ~ 37589293 (-)
ENSDARG00000005141	camkvb	11: 35364445 ~ 35441348 (+)
ENSDARG00000102632	ubc	10: 44692272 ~ 44694732 (+)
ENSDARG00000053130	pcp4a	10: 38969429 ~ 39011514 (-)
ENSDARG00000104820	psd3l	10: 7029664 ~ 7233955 (+)
ENSDARG00000056877	vamp2	10: 22838364 ~ 22845485 (-)
ENSDARG00000104458	rnasekb	10: 22916113 ~ 22918214 (-)
ENSDARG00000039729	asap1b	24: 10897768 ~ 11057305 (-)
ENSDARG00000036577	atp6v0cb	24: 39158283 ~ 39175750 (+)
ENSDARG00000058039	bhlhe22	24: 24461341 ~ 24463346 (+)
ENSDARG00000040008	neurod6a	24: 32411753 ~ 32474949 (+)
ENSDARG00000019307	dusp5	22: 29911326 ~ 29922872 (-)
ENSDARG00000101458	r3hdm1	22: 12361317 ~ 12393949 (+)
ENSDARG00000008407	tspan7b	22: 11440705 ~ 11493236 (-)
ENSDARG00000017446	camk1db	25: 7987920 ~ 8030425 (-)
ENSDARG00000101776	syt12	25: 7461624 ~ 7489371 (+)
--	calm3a.1	--
--	adcyap1r1a.1	--
--	ccdc136b.1	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Pallium (Glut+).

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	PRJNA554650 (6.5dpf)	Danio rerio	brain	4	Pallium (Glut+)	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000023771 (gabrb3)	marker	DOI:10.1038/nbt.4103
	PRJNA554650 (6.5dpf)	Danio rerio	brain	4	Pallium (Glut+)	baseline	6.5dpf, whole brain of nr1d1:VNP fish	ENSDARG00000044098 (egr2a)	marker	DOI:10.1038/nbt.4103

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Pallium (Glut+)

Distribution of Pallium (Glut+) in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences