Fish Single-cell RNA Database

CELL TYPE: Slow muscle

Distribution of Slow muscle in Tissues/Organs

The figure shows the distribution of cell number of each tissue in different species.
Click on the tissue on the x-axis to browse the detailed information of the tissue.
Click on the species on legend to browse the detailed information of the species.

Word Cloud of All Markers

Function

Gene ID	Symbol	Location
ENSDARG00000042469	ndufa12	4: 25829841 ~ 25836684 (-)
ENSDARG00000045514	atp5f1c	4: 25173299 ~ 25181552 (-)
ENSDARG00000039346	ndufa5	4: 4930406 ~ 4932619 (-)
ENSDARG00000032242	tnnt2c	4: 12031958 ~ 12033866 (+)
ENSDARG00000007745	uqcrfs1	7: 45400716 ~ 45406089 (+)
ENSDARG00000001431	actn3b	7: 6969909 ~ 7133475 (+)
ENSDARG00000104537	cox7c	5: 47726197 ~ 47727819 (-)
ENSDARG00000017086	asb12a	5: 22021142 ~ 22027357 (-)
ENSDARG00000035327	ckma	5: 36832079 ~ 36837846 (-)
ENSDARG00000068940	atp5meb	5: 9070382 ~ 9073433 (-)
ENSDARG00000011841	atp5l	5: 30699260 ~ 30701891 (+)
ENSDARG00000001950	ak1	5: 71699893 ~ 71722257 (-)
ENSDARG00000056008	atp5mc1	3: 23599290 ~ 23604396 (-)
ENSDARG00000011665	aldoaa	3: 39566999 ~ 39577052 (+)
ENSDARG00000020574	atp2a1	3: 26081343 ~ 26157066 (+)
ENSDARG00000037867	atp5mf	3: 40296785 ~ 40301467 (-)
ENSDARG00000028889	ndufb10	3: 18405136 ~ 18410968 (-)
ENSDARG00000014915	ndufab1b	3: 35535121 ~ 35541381 (-)
ENSDARG00000024433	pvalb4	3: 61174750 ~ 61185746 (-)
ENSDARG00000104587	srl	3: 12128117 ~ 12187245 (-)
ENSDARG00000098355	atp5pd	3: 48549294 ~ 48559906 (-)
ENSDARG00000024141	cav3	6: 41996066 ~ 42003780 (-)
ENSDARG00000009447	atp5mc3b	6: 10830844 ~ 10835922 (-)
ENSDARG00000044562	cycsb	6: 10910589 ~ 10912424 (-)
ENSDARG00000059128	uqcrh	6: 3509036 ~ 3514753 (-)
ENSDARG00000095897	atp5f1e	6: 49893488 ~ 49902140 (-)
ENSDARG00000038075	cyc1	6: 50381347 ~ 50390089 (+)
ENSDARG00000038577	cox6c	6: 52235441 ~ 52241529 (+)
ENSDARG00000095921	si:ch1073-325m22.2	2: 57268781 ~ 57287258 (-)
ENSDARG00000042245	myl13	2: 2470687 ~ 2481947 (+)
ENSDARG00000036371	acta1a	1: 53945934 ~ 53953532 (+)
ENSDARG00000037259	ndufb6	1: 26099250 ~ 26103232 (+)
ENSDARG00000033789	ndufb7	1: 55780128 ~ 55785722 (-)
ENSDARG00000096003	atp5md	1: 49432137 ~ 49434892 (-)
ENSDARG00000014313	atp5pf	1: 610082 ~ 614638 (-)
ENSDARG00000058463	ndufab1a	1: 9118100 ~ 9123465 (-)
ENSDARG00000052712	suclg1	1: 43652480 ~ 43684584 (-)
ENSDARG00000028213	ttn.2	9: 42894845 ~ 43073960 (-)
ENSDARG00000008982	casq2	9: 33097289 ~ 33107237 (-)
ENSDARG00000069920	cox17	9: 21235476 ~ 21238616 (-)
ENSDARG00000001788	atp5po	9: 33145522 ~ 33148873 (+)
ENSDARG00000017775	atp5mc3a	9: 2330798 ~ 2341127 (+)
ENSDARG00000090389	ndufv3	9: 19518674 ~ 19528038 (+)
ENSDARG00000056167	hspe1	9: 32301017 ~ 32305007 (+)
ENSDARG00000000563	ttn.1	9: 42732992 ~ 42873700 (-)
ENSDARG00000075709	ndufb3	9: 707086 ~ 712308 (-)
ENSDARG00000037860	cox6b2	16: 12504929 ~ 12512593 (-)
ENSDARG00000043457	gapdh	16: 17189839 ~ 17200120 (-)
ENSDARG00000040988	tpi1b	16: 12236339 ~ 12254994 (+)
ENSDARG00000041314	ndufb9	16: 6386941 ~ 6391275 (-)
ENSDARG00000092873	zgc:193541	20: 20726231 ~ 20730631 (+)
ENSDARG00000007682	ppdpfa	8: 23213320 ~ 23216035 (+)
ENSDARG00000022438	cox6a1	8: 39760258 ~ 39765996 (+)
ENSDARG00000053217	cox7a2a	17: 49983157 ~ 49995366 (-)
ENSDARG00000044092	atp5if1b	17: 24613255 ~ 24614724 (+)
ENSDARG00000029064	uqcrq	14: 38875078 ~ 38878419 (-)
ENSDARG00000092553	slc25a5	14: 32881625 ~ 32884138 (-)
ENSDARG00000093448	mpc1	13: 281214 ~ 285151 (+)
ENSDARG00000042559	tnni1c	18: 6625348 ~ 6634424 (-)
ENSDARG00000099663	cox5ab	18: 808911 ~ 812753 (+)
ENSDARG00000034470	aldoab	12: 4052180 ~ 4070058 (-)
ENSDARG00000010113	ndufb8	12: 48469755 ~ 48477031 (-)
ENSDARG00000006290	ndufs5	19: 35357196 ~ 35361556 (-)
ENSDARG00000023290	fabp3	19: 42955280 ~ 42993306 (+)
ENSDARG00000005162	tpm3	19: 10985369 ~ 11031394 (-)
ENSDARG00000067975	atp5if1a	19: 84052 ~ 85593 (-)
ENSDARG00000076126	actc1a	19: 47549568 ~ 47555956 (-)
ENSDARG00000099420	nme2b.2	19: 48111285 ~ 48114444 (+)
ENSDARG00000040565	ckmb	15: 23643718 ~ 23647078 (-)
ENSDARG00000030139	sdhdb	15: 21684435 ~ 21692630 (-)
ENSDARG00000037539	tnnc1b	23: 20110086 ~ 20112596 (+)
ENSDARG00000039007	eno3	23: 44611864 ~ 44625579 (+)
ENSDARG00000095273	cox8a	21: 28496194 ~ 28500704 (+)
ENSDARG00000043608	eif4ebp1	21: 21013147 ~ 21020708 (-)
ENSDARG00000010717	chchd10	21: 15704556 ~ 15708626 (+)
ENSDARG00000057571	pgam2	21: 19001669 ~ 19006641 (-)
ENSDARG00000104517	uqcr10	21: 5882300 ~ 5885723 (+)
ENSDARG00000115557	cox7b	21: 37442458 ~ 37445458 (+)
ENSDARG00000074552	ndufs7	11: 5842632 ~ 5852715 (+)
ENSDARG00000070083	atp5f1b	11: 13207898 ~ 13213059 (+)
ENSDARG00000089086	mustn1b	11: 18249809 ~ 18253111 (-)
ENSDARG00000042777	ndufa11	11: 6411169 ~ 6429705 (-)
ENSDARG00000104682	tpm2	10: 6318227 ~ 6375394 (+)
ENSDARG00000058041	ndufa8	10: 9410304 ~ 9419994 (+)
ENSDARG00000043371	mdh2	10: 33382858 ~ 33394568 (+)
ENSDARG00000062592	myl10	10: 33171501 ~ 33179988 (+)
ENSDARG00000019332	ndufb4	24: 23971056 ~ 23977285 (-)
ENSDARG00000099959	smyhc1	24: 40656510 ~ 40668208 (-)
ENSDARG00000019404	atp5f1d	22: 18766061 ~ 18779232 (-)
ENSDARG00000088383	cox5aa	25: 29075145 ~ 29080125 (-)
ENSDARG00000036671	tnni4b.2	25: 20089986 ~ 20099773 (+)
ENSDARG00000002988	tnnt2d	25: 20215964 ~ 20226584 (+)
ENSDARG00000063905	mt-co1	MT: 6425 ~ 7975 (+)
ENSDARG00000063911	mt-atp6	MT: 9052 ~ 9735 (+)
ENSDARG00000063912	mt-co3	MT: 9735 ~ 10520 (+)
--	cox7a3	--
--	cox5b	--

The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes of Slow muscle.

Detail Marker Information in Datasets

	Dataset ID	Species	Tissue / Organ	Cell cluster	Cell type	Experiment type	Sample	Marker gene	Marker class	Evidence
	GSE152982 (wild type)	Danio rerio	trunk	4	Slow muscle	baseline	1.25dpf, untreatment	ENSDARG00000042245 (myl13)	marker	DOI:10.1371/journal.pone.0254024
	GSE152982 (wild type)	Danio rerio	trunk	4	Slow muscle	baseline	1.25dpf, untreatment	ENSDARG00000062592 (myl10)	marker	DOI:10.1371/journal.pone.0254024

After clicking the magnifying glass button, the clustering and expression information of this marker gene will be displayed below.

species	Danio rerio
tissue	pituitary
cell type	Erythroid cells
gene	ENSDARG00000077809 il13
project	GSE158142
dataset	GSE158142 (20hpf)

CELL TYPE: Slow muscle

Distribution of Slow muscle in Tissues/Organs

Word Cloud of All Markers

Function

Detail Marker Information in Datasets

copyright 2021-present@Lab of Aquatic Bioinfomatics, Institute of Hydrobiology, Chinese Academy of Sciences