DATASET ID: GSE123241 (wild type)

Basic information

Tissue / Organ neuromast
Experiment type baseline
Sample 5dpf, wild type during sensory hair cell regeneration, lateral line sensory
Source dataset ID GSM3498552
Project ID GSE123241
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Dorsal-ventral cells ENSDARG00000027740 (adcyap1b) protein_coding marker DOI:10.7554/eLife.44431
    2 Central support cells ENSDARG00000100244 (ebf3a) protein_coding marker DOI:10.7554/eLife.44431
    2 Central support cells ENSDARG00000037879 (lfng) protein_coding marker DOI:10.1371/journal.pone.0167286
    2 Central support cells ENSDARG00000009094 (gata2b) protein_coding marker DOI:10.1016/bs.ctdb.2016.01.002
    2 Central support cells ENSDARG00000104431 (slc1a3a) protein_coding marker DOI:10.1016/j.stem.2015.07.002
    2 Central support cells ENSDARG00000073978 (crabp2a) protein_coding marker DOI:10.7554/eLife.44431
    3 Anterior-posterior cells ENSDARG00000105061 (si:ch73-261i21.5) protein_coding marker DOI:10.7554/eLife.44431
    4 Central support cells ENSDARG00000100244 (ebf3a) protein_coding marker DOI:10.7554/eLife.44431
    4 Central support cells ENSDARG00000037879 (lfng) protein_coding marker DOI:10.1371/journal.pone.0167286
    4 Central support cells ENSDARG00000009094 (gata2b) protein_coding marker DOI:10.1016/bs.ctdb.2016.01.002
    4 Central support cells ENSDARG00000104431 (slc1a3a) protein_coding marker DOI:10.1016/j.stem.2015.07.002
    5 Hair cells ENSDARG00000055294 (atoh1a) protein_coding marker DOI:10.7554/eLife.44431
    5 Hair cells ENSDARG00000056732 (her4.1) protein_coding marker DOI:10.7554/eLife.44431
    6 Mantle cells ENSDARG00000059279 (tfap2a) protein_coding marker DOI:10.7554/eLife.44431
    6 Mantle cells ENSDARG00000053858 (crip1) protein_coding marker DOI:10.7554/eLife.44431
    6 Mantle cells ENSDARG00000089368 (hopx) protein_coding marker DOI:10.7554/eLife.44431
    7 Hair cells ENSDARG00000055294 (atoh1a) protein_coding marker DOI:10.7554/eLife.44431

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)