DATASET ID: PRJNA605021 (supporting cells)

Basic information

Tissue / Organ neuromast
Experiment type baseline
Sample 7dpf, posterior lateral-line neuromast cells were isolated from the dissociated trunks of Tg[Et(krt4:EGFP)sqgw57A] transgenic zebrafish larvae
Source dataset ID SRR11031289
Project ID PRJNA605021
Species Danio rerio

Clustering Result

Function

  • The figures above shows the results of GO/KEGG/PPI of marker/potential marker genes in each cell cluster.
  • The button on the left can be used to select the target cell cluster.

    • Marker Relationship

    Cluster Cell type Gene id (symbol) Gene type Marker class Evidence
    1 Epidermal cells ENSDARG00000088711 (lgals1l1) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    2 Support cells ENSDARG00000089368 (hopx) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    2 Support cells ENSDARG00000043128 (cldne) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    3 Support cells ENSDARG00000104431 (slc1a3a) protein_coding marker DOI:10.1016/j.stem.2015.07.002
    4 Epidermal cells ENSDARG00000088711 (lgals1l1) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    6 Epidermal cells ENSDARG00000088711 (lgals1l1) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    7 Support cells ENSDARG00000035694 (stm) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    7 Support cells ENSDARG00000089368 (hopx) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    8 Support cells ENSDARG00000073978 (crabp2a) protein_coding marker DOI:10.7554/eLife.44431
    11 Support cells ENSDARG00000089368 (hopx) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    12 HSPCs ENSDARG00000004392 (hdr) protein_coding marker DOI:10.1016/j.cub.2020.01.027
    12 HSPCs ENSDARG00000019930 (tal1) protein_coding marker DOI:10.1016/j.cub.2020.01.027

    Expression


    • The expression of marker genes of each cluster is shown in the figure above.
    • More detailed expression of marker gene can be viewed in the gene details page. (Follow the links in the table above)